Difference between revisions of "Catalog"
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− | + | {{Catalog/MainLinks}} | |
− | * | + | * '''Browse''' [[Catalog#Browse_parts_by_curated_collection | '''collections''']] |
+ | *'''Browse''' [[Well Documented Parts | '''well documented parts''']] • [[Frequently_Used_Parts | '''frequently used parts''']] | ||
*'''Browse''' [[Catalog#Browse_parts_by_type|'''parts by type''']] • [[Catalog#Browse_devices_by_type|'''devices by type''']] | *'''Browse''' [[Catalog#Browse_parts_by_type|'''parts by type''']] • [[Catalog#Browse_devices_by_type|'''devices by type''']] | ||
*'''Browse parts and devices''' [[Catalog#Browse_parts and devices_by_function|'''by function''']] • [[Catalog#Browse_parts and devices_by_chassis|'''by chassis''']] • [[Catalog#Browse_parts and devices_by_standard|'''by standard''']] • '''or''' [[Catalog#Browse_parts and devices_by_contributor|'''by contributor''']] | *'''Browse parts and devices''' [[Catalog#Browse_parts and devices_by_function|'''by function''']] • [[Catalog#Browse_parts and devices_by_chassis|'''by chassis''']] • [[Catalog#Browse_parts and devices_by_standard|'''by standard''']] • '''or''' [[Catalog#Browse_parts and devices_by_contributor|'''by contributor''']] | ||
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*'''Browse''' [[Catalog#Browse user-supplied catalog pages|'''user-supplied catalog pages''']] - these pages have not undergone curation by the Registry but have been made by the Registry user community. Please feel free to add new catalog pages to this section. | *'''Browse''' [[Catalog#Browse user-supplied catalog pages|'''user-supplied catalog pages''']] - these pages have not undergone curation by the Registry but have been made by the Registry user community. Please feel free to add new catalog pages to this section. | ||
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|valign='top' |'''[https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Composite Composite parts] [[Help:Composite parts|(?)]]''': Composite parts are combinations of of two or more BioBrick parts. | |valign='top' |'''[https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Composite Composite parts] [[Help:Composite parts|(?)]]''': Composite parts are combinations of of two or more BioBrick parts. | ||
|} | |} | ||
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===Browse devices by type=== | ===Browse devices by type=== | ||
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|valign='top' |'''[https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Measurement Measurement devices] [[Help:Measurement devices|(?)]]''': | |valign='top' |'''[https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Measurement Measurement devices] [[Help:Measurement devices|(?)]]''': | ||
|} | |} | ||
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===Browse parts and devices by function=== | ===Browse parts and devices by function=== | ||
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|'''[[Viral vectors]]''': Parts involved in the production and modification of Viral vectors. | |'''[[Viral vectors]]''': Parts involved in the production and modification of Viral vectors. | ||
|} | |} | ||
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+ | ===Browse parts by curated collection=== | ||
+ | See more info on [[Collections | Registry collections]]. | ||
+ | {{Catalog/Collections/List}} | ||
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===Browse parts and devices by chassis=== | ===Browse parts and devices by chassis=== | ||
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|valign='top' |'''[[MammoBlocks]] [[Help:MammoBlocks|(?)]]''': MammoBlocks are a new category of BioBrick introduced by the MIT iGEM team in 2010 and continued in 2011. There are now dozens of MammoBlocks suitable for rapid expression in mammalian cells. | |valign='top' |'''[[MammoBlocks]] [[Help:MammoBlocks|(?)]]''': MammoBlocks are a new category of BioBrick introduced by the MIT iGEM team in 2010 and continued in 2011. There are now dozens of MammoBlocks suitable for rapid expression in mammalian cells. | ||
|} | |} | ||
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===Browse parts and devices by standard=== | ===Browse parts and devices by standard=== | ||
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|'''[[Assembly standard 23]] [[Help:Assembly standard 23|(?)]]''': Assembly standard 23, or the Silver standard, is compatible with original BioBrick assembly standard and allows for in-frame assembly of protein domains. | |'''[[Assembly standard 23]] [[Help:Assembly standard 23|(?)]]''': Assembly standard 23, or the Silver standard, is compatible with original BioBrick assembly standard and allows for in-frame assembly of protein domains. | ||
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− | |'''[[Assembly standard 25]] [[Help:Assembly standard 25|(?)]]''': Assembly standard 25, or the Freiburg standard, extends upon the original BioBrick assembly standard and allows for in-frame assembly of protein domains. | + | |'''[[RFC25 "Freiburg standard" parts|Assembly standard 25]] [[Help:Assembly standard 25|(?)]]''': Assembly standard 25, or the Freiburg standard, extends upon the original BioBrick assembly standard and allows for in-frame assembly of protein domains. |
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|'''[[Assembly standard 21]] [[Help:Assembly standard 21|(?)]]''': Assembly standard 21, also known as the BglBrick, BBb, or Berkeley standard, is optimized to enable in-frame assembly of protein domains. | |'''[[Assembly standard 21]] [[Help:Assembly standard 21|(?)]]''': Assembly standard 21, also known as the BglBrick, BBb, or Berkeley standard, is optimized to enable in-frame assembly of protein domains. | ||
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''Please see [http://hdl.handle.net/1721.1/45137 BBF RFC 29] for naming conventions for standards of physical composition.'' | ''Please see [http://hdl.handle.net/1721.1/45137 BBF RFC 29] for naming conventions for standards of physical composition.'' | ||
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− | '''[https://igem.org/Team_Parts?year= | + | ===Browse parts and devices by contributor=== |
+ | '''[https://igem.org/Team_Parts?year=2023 iGEM 2023]''' | | ||
+ | '''[https://igem.org/Team_Parts?year=2022 iGEM 2022]''' | '''[https://igem.org/Team_Parts?year=2021 iGEM 2021]''' | | ||
+ | '''[https://igem.org/Team_Parts?year=2020 iGEM 2020]''' | '''[https://igem.org/Team_Parts?year=2019 iGEM 2019]''' | | ||
+ | '''[https://igem.org/Team_Parts?year=2018 iGEM 2018]''' | '''[https://igem.org/Team_Parts?year=2017 iGEM 2017]''' | | ||
+ | '''[https://igem.org/Team_Parts?year=2016 iGEM 2016]''' | '''[https://igem.org/Team_Parts?year=2015 iGEM 2015]''' | '''[https://igem.org/Team_Parts?year=2014 iGEM 2014]''' | '''[https://igem.org/Team_Parts?year=2013 iGEM 2013]''' | '''[https://igem.org/Team_Parts?year=2012 iGEM 2012]''' | '''[https://igem.org/Team_Parts?year=2011 iGEM 2011]''' | '''[https://igem.org/Team_Parts?year=2010 iGEM 2010]''' | '''[https://igem.org/Team_Parts?year=2009 iGEM 2009]''' | '''[https://igem.org/Team_Parts?year=2008 iGEM 2008]''' | '''[https://igem.org/Team_Parts?year=2007 iGEM 2007]''' | '''[https://igem.org/Team_Parts?year=2006 iGEM 2006]''' | | ||
'''[https://igem.org/Team_Parts?year=2005 iGEM 2005]''' | '''[https://igem.org/Lab_Parts Labs]''' | '''[https://igem.org/Course_Parts Courses]''' | '''[https://igem.org/Team_Parts?year=2005 iGEM 2005]''' | '''[https://igem.org/Lab_Parts Labs]''' | '''[https://igem.org/Course_Parts Courses]''' | ||
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===Browse chassis=== | ===Browse chassis=== | ||
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|valign='top' |'''[[Cell-free chassis]] [[Help:Cell-free chassis|(?)]]''': ''In vitro'' transcription/translation systems can be useful for some synthetic biological systems. | |valign='top' |'''[[Cell-free chassis]] [[Help:Cell-free chassis|(?)]]''': ''In vitro'' transcription/translation systems can be useful for some synthetic biological systems. | ||
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+ | |valign='top' align='center' width=50px | {{Click || image=algae_icon.png | link=Chlamydomonas reinhardtii chassis |width=30px | height=30px}} | ||
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+ | |valign='top' |'''[[Chlamydomonas reinhardtii]] [[Help:Chlamydomonas reinhardtii chassis|(?)]]''': A unicellular alga with a promising future in synthetic biology. | ||
|} | |} | ||
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===Browse user-supplied catalog pages=== | ===Browse user-supplied catalog pages=== | ||
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|valign='top' align='center' width=50px | {{Click || image=bacteria_mtb.gif | link=''Magnetospirillum magneticum'' AMB-1 |width=30px | height=30px}} | |valign='top' align='center' width=50px | {{Click || image=bacteria_mtb.gif | link=''Magnetospirillum magneticum'' AMB-1 |width=30px | height=30px}} | ||
|valign='top' |'''[[Magnetotaxis]] [[Help:Magnetotaxis|(?)]]''': magnetotactic strain AMB-1 with BioBrick-compatible toolkit enables development of synthetic biology into magnetotaxis and beyond. | |valign='top' |'''[[Magnetotaxis]] [[Help:Magnetotaxis|(?)]]''': magnetotactic strain AMB-1 with BioBrick-compatible toolkit enables development of synthetic biology into magnetotaxis and beyond. | ||
− | |} | + | |- |
+ | |valign='top' align='center' width=50px | {{Click || image=algae_icon.png | link=Chlamydomonas reinhardtii |width=30px | height=30px}} | ||
+ | |valign='top' |'''[[Chlamydomonas_reinhardtii_parts | Chlamydomonas reinhardtii Part Collections ]] [[Help:Chlamydomonas reinhardtii|(?)]]''': fitting the MoClo syntax for plants following the Golden Gate cloning standard and therefore the iGEM RFC[1000] Type IIS standard. | ||
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+ | |valign='top' align='center' width=50px | {{Click || image=Part_icon_cell.png | link=Arthrospira platensis |width=30px | height=30px}} | ||
+ | |valign='top' |'''[[Arthrospira_platensis | Arthrospira platensis ]]''' | ||
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__NOEDITSECTION__ | __NOEDITSECTION__ | ||
__NOTOC__ | __NOTOC__ |
Latest revision as of 07:08, 6 October 2023
- Browse collections
- Browse well documented parts • frequently used parts
- Browse parts by type • devices by type
- Browse parts and devices by function • by chassis • by standard • or by contributor
- Browse chassis
- Browse user-supplied catalog pages - these pages have not undergone curation by the Registry but have been made by the Registry user community. Please feel free to add new catalog pages to this section.
Browse parts by type
Catalog | List | |
Promoters (?): A promoter is a DNA sequence that tends to recruit transcriptional machinery and lead to transcription of the downstream DNA sequence. | ||
Ribosome Binding Site/about (?): A ribosome binding site (RBS) is an RNA sequence found in mRNA to which ribosomes can bind and initiate translation. | ||
Protein domains (?): Protein domains are portions of proteins cloned in frame with other proteins domains to make up a protein coding sequence. Some protein domains might change the protein's location, alter its degradation rate, target the protein for cleavage, or enable it to be readily purified. | ||
Protein coding sequences (?): Protein coding sequences encode the amino acid sequence of a particular protein. Note that some protein coding sequences only encode a protein domain or half a protein. Others encode a full-length protein from start codon to stop codon. Coding sequences for gene expression reporters such as LacZ and GFP are also included here. | ||
Translational units (?): Translational units are composed of a ribosome binding site and a protein coding sequence. They begin at the site of translational initiation, the RBS, and end at the site of translational termination, the stop codon. | ||
Terminators (?): A terminator is an RNA sequence that usually occurs at the end of a gene or operon mRNA and causes transcription to stop. | ||
DNA (?): DNA parts provide functionality to the DNA itself. DNA parts include cloning sites, scars, primer binding sites, spacers, recombination sites, conjugative tranfer elements, transposons, origami, and aptamers. | ||
Plasmid backbones (?): A plasmid is a circular, double-stranded DNA molecules typically containing a few thousand base pairs that replicate within the cell independently of the chromosomal DNA. A plasmid backbone is defined as the plasmid sequence beginning with the BioBrick suffix, including the replication origin and antibiotic resistance marker, and ending with the BioBrick prefix. | ||
Plasmids (?): A plasmid is a circular, double-stranded DNA molecules typically containing a few thousand base pairs that replicate within the cell independently of the chromosomal DNA. If you're looking for a plasmid or vector to propagate or assemble plasmid backbones, please see the set of plasmid backbones. There are a few parts in the Registry that are only available as circular plasmids, not as parts in a plasmid backbone, you can find them here. Note that these plasmids largely do not conform to the BioBrick standard. | ||
Primers (?): A primer is a short single-stranded DNA sequences used as a starting point for PCR amplification or sequencing. Although primers are not actually available via the Registry distribution, we include commonly used primer sequences here. | ||
Composite parts (?): Composite parts are combinations of of two or more BioBrick parts. |
Browse devices by type
We're in the process of developing new support for the specification of devices in the Registry. For the time being, please see the existing device tables below.
Protein generators (?): | |
Reporters (?): | |
Inverters (?): | |
Receivers and senders (?): | |
Measurement devices (?): |
Browse parts and devices by function
This section replaces the previous Featured parts pages.
Biosafety: Parts and devices improving biological containment. | |
Biosynthesis: Parts involved in the production or degradation of chemicals and metabolites are listed here. | |
Cell-cell signaling and quorum sensing: Parts involved in intercellular signaling and quorum sensing between bacteria. | |
Cell death: Parts involved in killing cells. | |
Coliroid: Parts involved in taking a bacterial photograph. | |
Conjugation: Parts involved in DNA conjugation between bacteria. | |
Motility and chemotaxis: Parts involved in motility or chemotaxis of cells. | |
Odor production and sensing: Parts the produce or sense odorants. | |
DNA recombination: Parts involved in DNA recombination. | |
Viral vectors: Parts involved in the production and modification of Viral vectors. |
Browse parts by curated collection
See more info on Registry collections.
Part Type
Function
Chassis
Interlabs
Toolkit
- [http://2012.igem.org/Team:Freiburg|Freiburg 2012 TALE collection]
- Genome Integration Toolkit (miniTn7)
- JUMP Collection
Award Collections
See parts (and teams!) that have won awards in the iGEM competition
Project Types
Other
Browse parts and devices by chassis
Unless otherwise specified, most parts in the Registry work in Escherichia coli.
Catalog | List | |
Escherichia coli (?): Most parts in the Registry function in E. coli. | ||
Yeast (?): Yeast are simple eukaryotes. | ||
Bacteriophage T7 (?): Bacteriophage T7 is an obligate lytic phage of E. coli. | ||
Bacillus subtilis (?): Bacillus subtilis is a model gram-positive bacterium. | ||
MammoBlocks (?): MammoBlocks are a new category of BioBrick introduced by the MIT iGEM team in 2010 and continued in 2011. There are now dozens of MammoBlocks suitable for rapid expression in mammalian cells. |
Browse parts and devices by standard
Unless otherwise specified, most parts in the Registry comply with the original BioBrick assembly standard (also known as Assembly standard 10).
Assembly standard 10 (?): Assembly standard 10, or the original BioBrick assembly standard, was developed by Tom Knight in 2003. Most parts in the Registry comply with this assembly standard. |
Assembly standard 23 (?): Assembly standard 23, or the Silver standard, is compatible with original BioBrick assembly standard and allows for in-frame assembly of protein domains. |
Assembly standard 25 (?): Assembly standard 25, or the Freiburg standard, extends upon the original BioBrick assembly standard and allows for in-frame assembly of protein domains. |
Assembly standard 21 (?): Assembly standard 21, also known as the BglBrick, BBb, or Berkeley standard, is optimized to enable in-frame assembly of protein domains. |
Assembly standard 28 (?): Assembly standard 28, also known as the Lim lab standard or AarI cloning, is optimized for assembly of 3 parts into a vector simultaneously. Most parts that comply with Assembly standard 28 function in yeast. |
Assembly standard 15 (?): Julie Norville has developed a new set of parts for assembly of fusion proteins. |
Assembly standard 65 (?): The MIT iGEM 2010 and 2011 teams have developed a Gateway-based standard for assembly of mammalian promoters, genes, and expression vectors known as MammoBlocks. |
Please see [http://hdl.handle.net/1721.1/45137 BBF RFC 29] for naming conventions for standards of physical composition.
Browse parts and devices by contributor
iGEM 2023 | iGEM 2022 | iGEM 2021 | iGEM 2020 | iGEM 2019 | iGEM 2018 | iGEM 2017 | iGEM 2016 | iGEM 2015 | iGEM 2014 | iGEM 2013 | iGEM 2012 | iGEM 2011 | iGEM 2010 | iGEM 2009 | iGEM 2008 | iGEM 2007 | iGEM 2006 | iGEM 2005 | Labs | Courses
Browse chassis
Looking for a particular strain? You can find it here.
Catalog | List | |
Escherichia coli chassis (?): Most parts in the Registry operate in E. coli. | ||
Bacillus subtilis chassis (?): Bacillus subtilis is a model gram-positive bacterium. | ||
Cell-free chassis (?): In vitro transcription/translation systems can be useful for some synthetic biological systems. | ||
Chlamydomonas reinhardtii (?): A unicellular alga with a promising future in synthetic biology. |
Browse user-supplied catalog pages
These pages have not undergone curation by the Registry but have been made by the Registry user community. Please feel free to add new catalog pages to this section. Over time, high quality pages will be "promoted" to the primary Registry catalog collection.
Mesoplasma florum (?): Mesoplasma florum is a particularly simple model organism. | |
Genome Integration (?): The miniTn7 BioBrick tool kit is a set of fully BioBrick-compatible vectors based on Tn7 transposon for the integration of parts into microbial genomes. | |
Magnetotaxis (?): magnetotactic strain AMB-1 with BioBrick-compatible toolkit enables development of synthetic biology into magnetotaxis and beyond. | |
Chlamydomonas reinhardtii Part Collections (?): fitting the MoClo syntax for plants following the Golden Gate cloning standard and therefore the iGEM RFC[1000] Type IIS standard. | |
Arthrospira platensis
|