Difference between revisions of "Help:Contents"
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[[Category:Introduction]]
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{|
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{{HelpPage/MainLinks}}
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[[Registry_FAQ|'''Frequently Asked Questions''']]    |
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<html>
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[[Help: About the Registry|About the Registry]]     |
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.alert { color: red; font-size: 75%; }
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[[Registry:Bug reports|Bug Reports]] 
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<hr>
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{|cellspacing="0" cellpadding="0"|
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==An Introduction to BioBrick&trade; Standard Biological Parts==
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{|width=375px
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|valign='top'|[https://parts.igem.org/wiki/index.php?title=Help:An_Introduction_to_BioBricks https://static.igem.org/mediawiki/parts/5/58/Brick.png]
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BioBricks is a standard for interchangable parts, developed with a view to building biological systems in living cells. Here you'll find a brief introduction to BioBricks as well as the plasmids that contain them:
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*[[Help:An Introduction to BioBricks|An Introduction to BioBricks]]
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*[[Help:BioBrick Part Names|BioBrick Part Names]]
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*[[Help:Part tables|Part Tables]]
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*[[Help:Plasmids|An Introduction to Plasmids]]
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*[[Help:Part_Features|How to Edit and Interpret Part Features]]
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/ Introduction to the Abstraction Hierarchy]
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<div class="container_12">
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<div class="grid_12 infoBox"></html>
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<p>New to iGEM and the Registry? You'll want to head over to the <b>Learn section</b> first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (<strong>hq (at) igem . org</strong>). You can also look through the [[Help/Archive|old help pages]] if you couldn't find what you're looking for.</p>
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<html> </div>
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<div class="grid_4 infoBox">
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</html>
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=learn=
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*[[Help:Registry-at-a-Glance|Registry-at-a-glance]]
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*[[Help:Synthetic_Biology|Synthetic Biology]]
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*[[Help:Philosophy|Our Philosophy]]
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*[[Help:Parts|Parts]]
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*[[Help:Plasmid_Backbones|Plasmid Backbones]]
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*[[Help:Plasmid_Backbones/Features|Plasmid Backbone Features]]
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*[[Help:Prefix-Suffix|BioBrick Prefix and Suffix]]
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*[[Help:Standards|Standards]]
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*[[Help:Standards/Assembly|Assembly Standards]]
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*[[Help:Assembly|Assembly Methods]]
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*[[Help:DNA_Synthesis|DNA Synthesis]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=get parts=
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*[[Help:Register|Register]]
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*[[Help:Search|Search Tools]]
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*[[Help:Catalog|Catalog of Parts and Devices]]
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*[[Help:Browse_Distribution|Browse by Distribution]]
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*[[Help:Quick_Reference_Box|Part Quick Reference Box]]
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*[[Help:Quality_Control|Quality Control]]
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*[[Help:DNA_Distribution|Distribution Kit]]
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*[[Help:Distribution_Kits|Distribution Kit Archive]]
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*[[Help:Requesting Parts|Requesting Parts]]
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*[[Help:Requesting_Parts/Request_Status|Request Status]]
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*[[Help:Part_Status_Box|Part Status Box]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=make parts=
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*[[Help:Adding_Parts|Add a Basic Part Tutorial]]
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*[[Help:Adding_Parts/Composite|Add a Composite Part Tutorial]]
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*[[Help:Assembly/Scars|Assembly Scars]]
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*[[Help:Assembly_Compatibility|Assembly Compatability]]
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*[[Help:Adding_Parts/Synthesis|Adding a Synthesized Part]]
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*[https://parts.igem.org/partsdb/scars.cgi Supported Assembly Systems]
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*[[Help:Constructing_Parts|Constructing Parts]]
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*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
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*[[Assembly:RBS-CDS_issues|RBS-CDS Issues]]
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*[[Ribosome_Binding_Sites/Design|RBS Design]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=use parts=
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*[[Help:Document_Parts|Documenting Parts]]
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*[[Help:Using_Parts|Using Parts]]
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*[https://2020.igem.org/Measurement iGEM 2020 Measurement Hub]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=give parts=
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*[[Help:Shipping|Shipping]]
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*[[Help:Submission|Part Submission Requirements]] <span class="alert">updated!</span>
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*[[Help:Submission/Form|Submission Instructions]]
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*[[Help:Submission_Kit|Submission Format/Kit]]
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*[[Help:Twins|Twins]]
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*[[Help:Contributions|Make a Contribution]]
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*[[Help:Upload_Files|Upload Files]]
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*[[Help:Group_Parts_Table|Group Parts Table]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=quality control=
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*[[Help:Quality_Control|Quality Control Overview]]
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*[[Help:Sequence_Analysis_Tools|Sequence Analysis Tools]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=assembly standards=
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*[[Help:Standards/Assembly|Assembly Standards]]
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*[[Help:Assembly|Assembly Methods]]
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*[[Help:Assembly_Compatibility|Assembly Compatability]]
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*[[Help:Standards/Assembly/RFC10|BioBrick RFC[10]]]
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*[[Help:Standards/Assembly/Type_IIS|Type IIS RFC[1000]]]
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*[[Help:Standards/Assembly/RFC12|BioBrick BB-2 RFC[12]]]
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*[[Help:Standards/Assembly/RFC21|Berkeley RFC[21]]]
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*[[Help:Standards/Assembly/RFC23|Silver RFC[23]]]
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*[[Help:Standards/Assembly/RFC25|Freiburg RFC[25]]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=part pages=
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*[[Help:Nav/Part_Main_Page|Part Main Page]]
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*[[Help:Part_Status_Box|Part Status Box]]
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*[[Help:Sequence_Features|Sequence & Features]]
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*[[Help:Nav/Part_Design_Page|Design Page]]
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*[[Help:Nav/Experience_Page|Experience Page]]
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*[[Help:Nav/Hard_Information_Page|Information Page]]
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*[[Help:Nav/Part_Tools|Part Tools]]
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*[[Help:Requesting_Parts#Get_This_Part|Get This Part Page]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=protocols=
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*[[Help:Protocols/3A_Assembly|3A Assembly Protocol]]
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*[[Help:Competent_Cell_Test_Kit|Competent Cell Test Kit]]
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*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
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*[[Help:Protocols/Linearized_Plasmid_Backbones|Linearized Plasmid Backbone]]
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*[[Help:Protocols/Transformation|Transformation]]
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*[[Help:Protocols/Miniprep|Miniprep]]
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*[[Help:Protocols/Restriction_Digest|Restriction Digest]]
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*[[Help:Protocols/Ligation|Ligation]]
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*[[Help:Protocols/Competent_Cells|Competent Cell]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=materials=
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*[[Help:Materials/Antibiotic_Stocks|Antibiotic Stocks]]
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*[[Help:Materials/BioBrick_Primers|BioBrick and other common primers]]
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*[[Help:Materials/Strains|Strains]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
  
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==BioBrick&trade; Assembly==
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=resources=
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{|
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*[[Help:FAQ|FAQ]]
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|valign='top'|
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*[[Help:Glossary|Glossary]]
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Assembly  https://static.igem.org/mediawiki/parts/f/ff/Bricks.png]
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*[[Registry_API|Registry API]]
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*[[Help:Contact|Contact]]
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BioBricks have been designed to be assembled using normal cloning techniques. Find out more about the diffrent types of [[Help:BioBrick Assembly|Assembly]]:
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*[[Help:Applying_for_an_Account|Apply for an Account]]
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*[[Assembly:Standard assembly|Standard Assembly]]
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*[[Special:Categories|Wiki Categories]]
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*[[Assembly:Rolling assembly |Parallel Assembly]]
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<html>
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*[[Assembly:Robotic assembly|Automated Assembly]]
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</div>
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*[[Assembly:RBS-CDS issues|RBS-CDS Issues]]
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</div>
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|-
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==BioBrick&trade; Tools & The Registry==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Tools https://static.igem.org/mediawiki/parts/9/93/Toolman.png]
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|width=300px valign='top'|
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An overview of the Registry's computational tools and how one may go about using them as they look to design and develop parts, device and systems.
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*[[Help:Toolbox Overview | Toolbox Overview]]
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*[[Help:Sandbox Overview | Sandbox Overview]]
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*[[Tutorial:Adding a Basic Part|Tutorial: How to add a basic BioBrick]]
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*[[Help:Standardization|Making BioBrick DNA]]
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</html>
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|width=40px|
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|valign='top'|
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==At the Bench==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:At_the_Bench https://static.igem.org/mediawiki/parts/f/f7/Bench.png]
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Overview & links on how to physically assembly BioBricks
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*[http://openwetware.org/wiki/BioBricks_construction_tutorial How to perform a construction] - <small>A tutorial drawing on different [http://openwetware.org OpenWetware] protocols on how to make assemblies using Biobricks</small>
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*[http://openwetware.org/wiki/BE.109:Schedule Genetic engineering] - <small>Recommended especially for wet-lab beginners!  Introduction to genetic engineering and cloning techniques.</small>
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*[[Help: How to make agar|Agar/color coding]]
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|-
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==DNA Part Repositories==
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{|valign'top'|
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|[https://parts.igem.org/wiki/index.php?title=Help:Physical_DNA https://parts.igem.org/images/iGEM_buttons/Buttondna.gif]
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|valign'top'|
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Considers Availablity, distribution etc.
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*[[Help:Biobrick delivery|Biobrick Delivery and Repositories]]
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*[[Help:How to send parts|How to send your parts to the Registry]]
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|width=40px|
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|valign='top'|
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==Users & Groups==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:Users_and_Groups https://static.igem.org/mediawiki/parts/6/69/Buttonusersgroups.gif]
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Registry Users & groups overview
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*[[Help: Registry Accounts|How to make Registry Accounts]]
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*[http://parts.mit.edu/wiki/index.php/Help:Wiki How to edit a Wiki]
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*[[Help: Partinfo Tag|Including Part Information on your wiki page]]
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*[[Help: Editing Experience|Editing Part experience]]
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|}
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----
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[[Registry:Feature requests|Feature Requests]]  |    [[Help: 2006 Registry Web Site Design|Registry site design]]  |  [[Registry graphics gallery]]  | [[Help: Glossary|Glossary of Terms]]
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----
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==Help: Under Construction==
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These documentation seeds are not yet complete...
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{|
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*[[Help: Registry 2.0|Registry 2.0 Ideas]] - Ideas and discussion of how the Registry should change at the end of 2006.
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*[[Help: Part Categories|Part Categories]]
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*[[Help: Part Versions|Part Versions]]
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*[[Help:Starting Wet-lab]]
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*[[Help:Deleting parts]]
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*[[New Standard Assembly]]
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*[[Help: Twins|Twins]]
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*[https://parts.igem.org/cgi/htdocs/registry.cgi Old About the Registry]
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/index.cgi Parts, Devices & Systems]
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*[[Help: How to analyze sequences|How to sequence your part]]
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*[[Users and Groups]]
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*[[Help:BioBrick Design|BioBrick Design]]
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*[[Tutorial:Adding a BioBrick Composite Part|Composite Part Tutorial]]
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Latest revision as of 13:57, 8 February 2024

New to iGEM and the Registry? You'll want to head over to the Learn section first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (hq (at) igem . org). You can also look through the old help pages if you couldn't find what you're looking for.

learn

get parts

make parts

use parts

give parts

quality control

assembly standards

part pages

protocols

materials

resources