Difference between revisions of "Help:Contents"
m
 
(233 intermediate revisions by 16 users not shown)
Line 1: Line 1:
−
This section of the Registry Wiki is dedicated to the documentation of and help with the usage of the Registry of Standard Parts
+
[[Category:Introduction]]
−
<hr>
+
{{HelpPage/MainLinks}}
−
[[Registry_FAQ|'''The Registry FAQ''']] - Help's greatest hits<br>
+
{{HelpPage/GridCSS}}
−
[[Registry:Bug reports|Bug Reports]] and [[Registry:Feature requests|Feature Requests]]<br>
+
__NOTOC__
−
[[Help: About the Registry|About the Registry]] - Mission Statement<br>
+
<html>
−
[[Characterization of Parts]] - Part ontology and measurements
+
<style type="text/css">
−
<hr>
+
.alert { color: red; font-size: 75%; }
−
{|border="1" cellpadding="2"
+
</style>
  
−
!style="background:#FAF8CC;" width="400"|'''General Information'''
+
<div class="container_12">
−
!style="background:#FAF8CC;" width="400"|'''How-to's and Tutorials'''
+
<div class="grid_12 infoBox"></html>
−
|-
+
<p>New to iGEM and the Registry? You'll want to head over to the <b>Learn section</b> first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (<strong>hq (at) igem . org</strong>). You can also look through the [[Help/Archive|old help pages]] if you couldn't find what you're looking for.</p>
−
|  
+
<html> </div>
−
*[[An Introduction to BioBricks]]
+
<div class="grid_4 infoBox">
−
*[[Part Types]] - <small>Click the [[Part Types|(?)]]'s on this page for the Help documentation on the corresponding part type</small>
+
</html>
−
**[[Part Names]]
+
=learn=
−
**[[Help:Plasmids|Plasmids]]
+
*[[Help:Registry-at-a-Glance|Registry-at-a-glance]]
−
***[[Help:Plasmids/Construction Plasmids|Plasmids/Construction Plasmids]]
+
*[[Help:Synthetic_Biology|Synthetic Biology]]
−
***[[Help:Plasmid features|Plasmid Features]]
+
*[[Help:Philosophy|Our Philosophy]]
−
*[[Help:Part tables|Part Tables]]
+
*[[Help:Parts|Parts]]
−
**[[Help:Availability and usefulness|Availability and Usefulness]]
+
*[[Help:Plasmid_Backbones|Plasmid Backbones]]
−
*[[Assembly|Assembly of Registry Parts]]
+
*[[Help:Plasmid_Backbones/Features|Plasmid Backbone Features]]
−
*[[Help: 2006 Registry Web Site Design|Registry site design]]
+
*[[Help:Prefix-Suffix|BioBrick Prefix and Suffix]]
−
*[[Help:Biobrick delivery|Biobrick Delivery and Repositories]]
+
*[[Help:Standards|Standards]]
−
*[[Help: Glossary|Glossary and Index of Terms]]  
+
*[[Help:Standards/Assembly|Assembly Standards]]
−
||  
+
*[[Help:Assembly|Assembly Methods]]
−
<br>
+
*[[Help:DNA_Synthesis|DNA Synthesis]]
−
*[http://openwetware.org/wiki/BioBricks_construction_tutorial How to perform a construction] - <small>A tutorial drawing on different [www.openwetware.org OpenWetware] protocols on how to make assemblies using Biobricks</small>
+
<html>
−
*[http://openwetware.org/wiki/BE.109:Schedule Genetic engineering] - <small>Recommended especially for wet-lab beginners!  MIT's "BE:109" class provides an in-depth look at starting general genetic engineering techniques from isolating DNA to completing a molecular cloning.</small>
+
</div>
−
*[http://parts.mit.edu/wiki/index.php/Help:Wiki How to edit a Wiki]
+
<div class="grid_4 infoBox">
−
**[[Help: Editing Experience|How to edit experience with a part]]
+
</html>
−
**[[Help: Partinfo Tag|How to include Part Information on your wiki page]]
+
=get parts=
−
*[[Help: Registry Accounts|How to make Registry Accounts]]
+
*[[Help:Register|Register]]
−
*[[Help: How to make a BioBrick|How to make a BioBrick]]
+
*[[Help:Search|Search Tools]]
−
**[[Basic Biobrick, example 1|Using the "Add a part" Registry Function]]
+
*[[Help:Catalog|Catalog of Parts and Devices]]
−
**[[Help:Standardization|Standardization of non-Biobrick sequence]]  
+
*[[Help:Browse_Distribution|Browse by Distribution]]
−
*[[Help: How to analyze sequences|How to sequence your part]]
+
*[[Help:Quick_Reference_Box|Part Quick Reference Box]]
−
*[[Help: How to send parts|How to send parts to the Registry]]
+
*[[Help:Quality_Control|Quality Control]]
−
**[[Help: How to make agar|How to make agar/color coding]]
+
*[[Help:DNA_Distribution|Distribution Kit]]
 +
*[[Help:Distribution_Kits|Distribution Kit Archive]]
 +
*[[Help:Requesting Parts|Requesting Parts]]
 +
*[[Help:Requesting_Parts/Request_Status|Request Status]]
 +
*[[Help:Part_Status_Box|Part Status Box]]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=make parts=
 +
*[[Help:Adding_Parts|Add a Basic Part Tutorial]]
 +
*[[Help:Adding_Parts/Composite|Add a Composite Part Tutorial]]
 +
*[[Help:Assembly/Scars|Assembly Scars]]
 +
*[[Help:Assembly_Compatibility|Assembly Compatability]]
 +
*[[Help:Adding_Parts/Synthesis|Adding a Synthesized Part]]
 +
*[https://parts.igem.org/partsdb/scars.cgi Supported Assembly Systems]
 +
*[[Help:Constructing_Parts|Constructing Parts]]
 +
*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
 +
*[[Assembly:RBS-CDS_issues|RBS-CDS Issues]]
 +
*[[Ribosome_Binding_Sites/Design|RBS Design]]
 +
<html>
 +
</div>
 +
<div class="clear"></div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=use parts=
 +
*[[Help:Document_Parts|Documenting Parts]]
 +
*[[Help:Using_Parts|Using Parts]]
 +
*[https://2020.igem.org/Measurement iGEM 2020 Measurement Hub]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=give parts=
 +
*[[Help:Shipping|Shipping]]
 +
*[[Help:Submission|Part Submission Requirements]] <span class="alert">updated!</span>
 +
*[[Help:Submission/Form|Submission Instructions]]
 +
*[[Help:Submission_Kit|Submission Format/Kit]]
 +
*[[Help:Twins|Twins]]
 +
*[[Help:Contributions|Make a Contribution]]
 +
*[[Help:Upload_Files|Upload Files]]
 +
*[[Help:Group_Parts_Table|Group Parts Table]]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=quality control=
 +
*[[Help:Quality_Control|Quality Control Overview]]
 +
*[[Help:Sequence_Analysis_Tools|Sequence Analysis Tools]]
 +
<html>
 +
</div>
 +
<div class="clear"></div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=assembly standards=
 +
*[[Help:Standards/Assembly|Assembly Standards]]
 +
*[[Help:Assembly|Assembly Methods]]
 +
*[[Help:Assembly_Compatibility|Assembly Compatability]]
 +
*[[Help:Standards/Assembly/RFC10|BioBrick RFC[10]]]
 +
*[[Help:Standards/Assembly/Type_IIS|Type IIS RFC[1000]]]
 +
*[[Help:Standards/Assembly/RFC12|BioBrick BB-2 RFC[12]]]
 +
*[[Help:Standards/Assembly/RFC21|Berkeley RFC[21]]]
 +
*[[Help:Standards/Assembly/RFC23|Silver RFC[23]]]
 +
*[[Help:Standards/Assembly/RFC25|Freiburg RFC[25]]]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=part pages=
 +
*[[Help:Nav/Part_Main_Page|Part Main Page]]
 +
*[[Help:Part_Status_Box|Part Status Box]]
 +
*[[Help:Sequence_Features|Sequence & Features]]
 +
*[[Help:Nav/Part_Design_Page|Design Page]]
 +
*[[Help:Nav/Experience_Page|Experience Page]]
 +
*[[Help:Nav/Hard_Information_Page|Information Page]]
 +
*[[Help:Nav/Part_Tools|Part Tools]]
 +
*[[Help:Requesting_Parts#Get_This_Part|Get This Part Page]]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=protocols=
 +
*[[Help:Protocols/3A_Assembly|3A Assembly Protocol]]
 +
*[[Help:Competent_Cell_Test_Kit|Competent Cell Test Kit]]
 +
*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
 +
*[[Help:Protocols/Linearized_Plasmid_Backbones|Linearized Plasmid Backbone]]
 +
*[[Help:Protocols/Transformation|Transformation]]
 +
*[[Help:Protocols/Miniprep|Miniprep]]
 +
*[[Help:Protocols/Restriction_Digest|Restriction Digest]]
 +
*[[Help:Protocols/Ligation|Ligation]]
 +
*[[Help:Protocols/Competent_Cells|Competent Cell]]
 +
<html>
 +
</div>
 +
<div class="clear"></div>
 +
<div class="grid_4 infoBox">
 +
</html>
 +
=materials=
 +
*[[Help:Materials/Antibiotic_Stocks|Antibiotic Stocks]]
 +
*[[Help:Materials/BioBrick_Primers|BioBrick and other common primers]]
 +
*[[Help:Materials/Strains|Strains]]
 +
<html>
 +
</div>
 +
<div class="grid_4 infoBox">
 +
</html>
  
−
|}
+
=resources=
 +
*[[Help:FAQ|FAQ]]
 +
*[[Help:Glossary|Glossary]]
 +
*[[Registry_API|Registry API]]
 +
*[[Help:Contact|Contact]]
 +
*[[Help:Applying_for_an_Account|Apply for an Account]]
 +
*[[Special:Categories|Wiki Categories]]
 +
<html>
 +
</div>
 +
</div>
  
−
 
+
</html>
−
 
+
−
<hr>
+
−
'''Help: Under Construction''' - These documentation seeds are not yet complete...
+
−
{|
+
−
|
+
−
*[[Help: Registry 2.0|Registry 2.0 Ideas]] - Ideas and discussion of how the Registry should change at the end of 2006.
+
−
*[[Help: Part Categories|Part Categories]]
+
−
*[[Help: Part Versions|Part Versions]]
+
−
*[[Help:Starting Wet-lab]]
+
−
*[[Help:Deleting parts]]
+
−
||
+
−
*[[Help: Twins|Twins]]
+
−
*[https://parts.igem.org/cgi/htdocs/registry.cgi Old About the Registry]
+
−
*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/index.cgi Parts, Devices & Systems]
+
−
|}
+

Latest revision as of 13:57, 8 February 2024

New to iGEM and the Registry? You'll want to head over to the Learn section first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (hq (at) igem . org). You can also look through the old help pages if you couldn't find what you're looking for.

learn

get parts

make parts

use parts

give parts

quality control

assembly standards

part pages

protocols

materials

resources