Difference between revisions of "Help:Contents"
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__NOTOC__ __NOEDITSECTION__
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[[Category:Introduction]]
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{|
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{{HelpPage/MainLinks}}
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{{HelpPage/GridCSS}}
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[[Registry_FAQ|'''Frequently Asked Questions''']]    |
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__NOTOC__
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<html>
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[[Help: About the Registry|About the Registry]]     |
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<style type="text/css">
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.alert { color: red; font-size: 75%; }
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[[Registry:Bug reports|Bug Reports]]  |
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</style>
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[[Registry:Feature requests|Feature Requests]]  |
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<hr>
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{|cellspacing="0" cellpadding="0"|
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|valign='top'|
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==An Introduction to BioBrick&trade; Standard Biological Parts==
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<div class="container_12">
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{|width=375px
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<div class="grid_12 infoBox"></html>
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|valign='top'|[https://parts.igem.org/wiki/index.php?title=Help:An_Introduction_to_BioBricks https://static.igem.org/mediawiki/parts/5/58/Brick.png]
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<p>New to iGEM and the Registry? You'll want to head over to the <b>Learn section</b> first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (<strong>hq (at) igem . org</strong>). You can also look through the [[Help/Archive|old help pages]] if you couldn't find what you're looking for.</p>
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<html> </div>
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BioBricks is a standard for interchangable parts, developed with a view to building biological systems in living cells. Here you'll find a brief introduction to BioBricks as well as the plasmids that contain them:
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<div class="grid_4 infoBox">
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*[[Help:Team experience tutorial|A Team Experience Tutorial]]
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</html>
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*[[Help:An Introduction to BioBricks|An introduction to BioBrick&reg; parts]]
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=learn=
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*[[Help:BioBrick Part Names|BioBrick Part Names]]
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*[[Help:Registry-at-a-Glance|Registry-at-a-glance]]
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*[[Help:Part tables|Part Tables]]
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*[[Help:Synthetic_Biology|Synthetic Biology]]
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*[[Help:Plasmids|An introduction to Plasmids]]
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*[[Help:Philosophy|Our Philosophy]]
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*[[Help:Ribosome Binding Sites|An introduction to Ribosome Binding Sites]]
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*[[Help:Parts|Parts]]
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*[[Help:Terminators|An introduction to Terminators]]
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*[[Help:Plasmid_Backbones|Plasmid Backbones]]
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*[[Help:Part_Features|How to Edit and Interpret Part Features]]
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*[[Help:Plasmid_Backbones/Features|Plasmid Backbone Features]]
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/ Introduction to the Abstraction Hierarchy]
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*[[Help:Prefix-Suffix|BioBrick Prefix and Suffix]]
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*[[Help:Standards|Standards]]
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*[[Help:Standards/Assembly|Assembly Standards]]
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*[[Help:Assembly|Assembly Methods]]
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*[[Help:DNA_Synthesis|DNA Synthesis]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=get parts=
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*[[Help:Register|Register]]
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*[[Help:Search|Search Tools]]
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*[[Help:Catalog|Catalog of Parts and Devices]]
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*[[Help:Browse_Distribution|Browse by Distribution]]
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*[[Help:Quick_Reference_Box|Part Quick Reference Box]]
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*[[Help:Quality_Control|Quality Control]]
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*[[Help:DNA_Distribution|Distribution Kit]]
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*[[Help:Distribution_Kits|Distribution Kit Archive]]
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*[[Help:Requesting Parts|Requesting Parts]]
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*[[Help:Requesting_Parts/Request_Status|Request Status]]
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*[[Help:Part_Status_Box|Part Status Box]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=make parts=
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*[[Help:Adding_Parts|Add a Basic Part Tutorial]]
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*[[Help:Adding_Parts/Composite|Add a Composite Part Tutorial]]
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*[[Help:Assembly/Scars|Assembly Scars]]
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*[[Help:Assembly_Compatibility|Assembly Compatability]]
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*[[Help:Adding_Parts/Synthesis|Adding a Synthesized Part]]
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*[https://parts.igem.org/partsdb/scars.cgi Supported Assembly Systems]
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*[[Help:Constructing_Parts|Constructing Parts]]
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*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
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*[[Assembly:RBS-CDS_issues|RBS-CDS Issues]]
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*[[Ribosome_Binding_Sites/Design|RBS Design]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=use parts=
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*[[Help:Document_Parts|Documenting Parts]]
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*[[Help:Using_Parts|Using Parts]]
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*[https://2020.igem.org/Measurement iGEM 2020 Measurement Hub]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=give parts=
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*[[Help:Shipping|Shipping]]
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*[[Help:Submission|Part Submission Requirements]] <span class="alert">updated!</span>
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*[[Help:Submission/Form|Submission Instructions]]
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*[[Help:Submission_Kit|Submission Format/Kit]]
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*[[Help:Twins|Twins]]
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*[[Help:Contributions|Make a Contribution]]
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*[[Help:Upload_Files|Upload Files]]
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*[[Help:Group_Parts_Table|Group Parts Table]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=quality control=
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*[[Help:Quality_Control|Quality Control Overview]]
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*[[Help:Sequence_Analysis_Tools|Sequence Analysis Tools]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=assembly standards=
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*[[Help:Standards/Assembly|Assembly Standards]]
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*[[Help:Assembly|Assembly Methods]]
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*[[Help:Assembly_Compatibility|Assembly Compatability]]
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*[[Help:Standards/Assembly/RFC10|BioBrick RFC[10]]]
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*[[Help:Standards/Assembly/Type_IIS|Type IIS RFC[1000]]]
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*[[Help:Standards/Assembly/RFC12|BioBrick BB-2 RFC[12]]]
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*[[Help:Standards/Assembly/RFC21|Berkeley RFC[21]]]
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*[[Help:Standards/Assembly/RFC23|Silver RFC[23]]]
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*[[Help:Standards/Assembly/RFC25|Freiburg RFC[25]]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=part pages=
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*[[Help:Nav/Part_Main_Page|Part Main Page]]
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*[[Help:Part_Status_Box|Part Status Box]]
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*[[Help:Sequence_Features|Sequence & Features]]
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*[[Help:Nav/Part_Design_Page|Design Page]]
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*[[Help:Nav/Experience_Page|Experience Page]]
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*[[Help:Nav/Hard_Information_Page|Information Page]]
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*[[Help:Nav/Part_Tools|Part Tools]]
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*[[Help:Requesting_Parts#Get_This_Part|Get This Part Page]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
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=protocols=
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*[[Help:Protocols/3A_Assembly|3A Assembly Protocol]]
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*[[Help:Competent_Cell_Test_Kit|Competent Cell Test Kit]]
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*[[Help:Protocols/PCR_Standardization|PCR Standardization]]
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*[[Help:Protocols/Linearized_Plasmid_Backbones|Linearized Plasmid Backbone]]
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*[[Help:Protocols/Transformation|Transformation]]
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*[[Help:Protocols/Miniprep|Miniprep]]
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*[[Help:Protocols/Restriction_Digest|Restriction Digest]]
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*[[Help:Protocols/Ligation|Ligation]]
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*[[Help:Protocols/Competent_Cells|Competent Cell]]
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<html>
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</div>
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<div class="clear"></div>
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<div class="grid_4 infoBox">
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</html>
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=materials=
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*[[Help:Materials/Antibiotic_Stocks|Antibiotic Stocks]]
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*[[Help:Materials/BioBrick_Primers|BioBrick and other common primers]]
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*[[Help:Materials/Strains|Strains]]
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<html>
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</div>
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<div class="grid_4 infoBox">
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</html>
  
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=resources=
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|width=40px|
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*[[Help:FAQ|FAQ]]
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|valign='top' width=375px|
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*[[Help:Glossary|Glossary]]
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*[[Registry_API|Registry API]]
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*[[Help:Contact|Contact]]
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*[[Help:Applying_for_an_Account|Apply for an Account]]
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*[[Special:Categories|Wiki Categories]]
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<html>
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</div>
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</div>
  
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==Assembling Biological Parts==
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</html>
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Assembly  https://static.igem.org/mediawiki/parts/f/ff/Bricks.png]
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|valign='top' |
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BioBricks have been designed to be assembled using normal cloning techniques. Find out more about the diffrent types of [[Help:BioBrick Assembly|Assembly]]:
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*[[Assembly:3A Assembly|3A Assembly]]
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*[[Assembly:Standard assembly|Standard Assembly]]
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*[[Assembly:Rolling assembly |Parallel Assembly]]
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*[[Assembly:Robotic assembly|Automated Assembly]]
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*[[Assembly:RBS-CDS issues|RBS-CDS Issues]]
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*[[Help:BioBrick Prefix and Suffix|BioBrick Prefix and Suffix]]
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*[https://parts.igem.org/partsdb/scars.cgi Registry Assembly Standards]
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|}
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|-
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|valign='top'|
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==BioBrick&trade; Tools & The Registry==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:BioBrick_Tools https://static.igem.org/mediawiki/parts/9/93/Toolman.png]
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|width=300px valign='top'|
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An overview of the Registry's computational tools and how one may go about using them as they look to design and develop parts, device and systems.
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*[[Help:Toolbox Overview | Toolbox Overview]]
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*[[Help:Sandbox Overview | Sandbox Overview]] 
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*[[Tutorial:Adding a Basic Part|Tutorial: How to add a basic BioBrick]]
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*[[Help:Standardization|Making BioBrick DNA]]
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*[[Registry_API|Registry API for Software Developers]]
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|}
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|width=40px|
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|valign='top'|
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==At the Bench==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:At_the_Bench https://static.igem.org/mediawiki/parts/f/f7/Bench.png]
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Overview & links on how to physically assembly BioBricks
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*[http://openwetware.org/wiki/BioBricks_construction_tutorial How to perform a construction] - A step by step tutorial detailing one method of making [[Help:BioBrick Assembly|Biobrick assemblies]]
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*[[Help:Protocols]]
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*[http://openwetware.org/wiki/Protocols Open Wetware Protocols]
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*[[Help:Equipment|What we're using to produce the standardized parts distributed for the competition]]
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|}
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|-
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|valign='top'|
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==DNA Part Repositories==
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{|valign'top'|
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|[https://parts.igem.org/wiki/index.php?title=Help:Physical_DNA https://parts.igem.org/images/iGEM_buttons/Buttondna.gif]
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|valign'top'|
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*'''<span style="color:red; font-weight:bold; font-size:115%;">NEW:</span>''' [[Help:Spring_2011_DNA_distribution|Information about the Spring 2011 DNA Distribution]]
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*[[Help:Requesting_Parts|Requesting Parts]]
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*[[Help:Using_the_online_QC_resources|Using the online QC resources]]
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*[[Help:Protocols/Linearized_Plasmid_Backbones|Linearized Plasmid Backbones]]
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*[[Help:Transformation_Protocol|Transforming Competent Cells]]
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*[[Help:Sequencing Tool:Automatic Assessment Algorithm|Automatic Sequencing Algorithm]]
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*[[Help:Shipping Stabs|Shipping times for stabs]]
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*[[Help:Repositories:More | More...]]
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|}
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|width=40px|
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|valign='top'|
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==Users & Groups==
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{|
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[https://parts.igem.org/wiki/index.php?title=Help:Users_and_Groups https://static.igem.org/mediawiki/parts/3/31/Users_and_groups_72px_icon.png]
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Registry Users & groups overview
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*[[Help: Registry Accounts|How to make Registry Accounts]]
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*[http://parts.mit.edu/wiki/index.php/Help:Wiki How to edit a Wiki]
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*[[Help: Partinfo Tag|Including Part Information on your wiki page]]
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*[[Help: Editing Experience|Editing Part experience]]
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*[[Help: Single Login System|Single login system for iGEM and the Registry]]
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|}
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----
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==Help: Glossary==
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[[Image:glossary.jpg]]
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[[Help:Glossary| A compedium and index of terms found in the Registry and synthetic biology indexed alphabetically]]
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==Help: Under Construction==
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These documentation seeds are not yet complete...
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{|
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*[[Help: Registry 2.0|Registry 2.0 Ideas]] - Ideas and discussion of how the Registry should change at the end of 2006.
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*[[Help: Part Categories|Part Categories]]
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*[[Help: Part Versions|Part Versions]]
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*[[Help:Starting Wet-lab]]
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*[[Registry graphics gallery]]
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*[[Help: Wiki Tag groupparts|Wiki tag grouparts]]
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*[[Help: Twins|Twins]]
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*[https://parts.igem.org/cgi/htdocs/registry.cgi Old About the Registry]
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*[https://parts.igem.org/cgi/htdocs/AbstractionHierarchy/index.cgi Parts, Devices & Systems]
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*[[Help:BioBrick Design|BioBrick Design]]
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*[[Tutorial:Adding a BioBrick Composite Part|Composite Part Tutorial]]
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|}
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Latest revision as of 13:57, 8 February 2024

New to iGEM and the Registry? You'll want to head over to the Learn section first to get an introduction on synthetic biology based on standardized parts and the philosophy of iGEM and the Registry. We welcome suggestions via email (hq (at) igem . org). You can also look through the old help pages if you couldn't find what you're looking for.

learn

get parts

make parts

use parts

give parts

quality control

assembly standards

part pages

protocols

materials

resources