Protein coding sequences/Membrane
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Receptors
Receptors tend to have three domains:
- An extracellular domain for binding ligands such as proteins, peptides or small molecules
- A transmembrane domain
- An intracellular or cytoplasmic domain which frequently can participate in some sort of signal transduction event such as phosphorylation
| Name | Protein | Description | Tag | Direction | UniProt | KEGG | Length | Status |
|---|---|---|---|---|---|---|---|---|
| BBa_J07009 | ToxR | toxicity-gene activator from Vibrio cholerae | None | Forward | P15795 | 630 | In stock | |
| BBa_K133063 | (TIR)TLR3 | 453 | It's complicated | |||||
| BBa_K133064 | (TIR)TLR9 | 585 | It's complicated | |||||
| BBa_K133065 | (TMTIR)TLR3 | 600 | It's complicated | |||||
| BBa_K133069 | (TMTIR)TLR3stop | 603 | It's complicated | |||||
| BBa_K133067 | (TMTIR)TLR4 | 621 | It's complicated | |||||
| BBa_K133060 | (TMTIR)TLR9 | 645 | It's complicated | |||||
| BBa_K209400 | AarI B-C part, hM4D | 1434 | It's complicated | |||||
| BBa_K209401 | AarI B-C part, Rs1.3 | 1407 | It's complicated | |||||
| BBa_K2627000 | Advanced CcaS with PAS domain knocked out | 1407 | It's complicated | |||||
| BBa_K2627001 | Advanced CcaS with PAS domain knocked out | 1410 | It's complicated | |||||
| BBa_K2627002 | Advanced CcaS with PAS domain knocked out | 1389 | It's complicated | |||||
| BBa_K748001 | AgrC protein coding sequence. AgrC is main component of S.aureus agr quorum sensing system. | 1296 | It's complicated | |||||
| BBa_K3183005 | AgrC2 Quorum Sensing Histidine Kinase; C. difficile | 1314 | Not in stock | |||||
| BBa_I712002 | CCR5 | 1059 | It's complicated | |||||
| BBa_I712003 | CCR5-NUb | 1194 | It's complicated | |||||
| BBa_I712010 | CD4 sequence without signal peptide | 1299 | It's complicated | |||||
| BBa_I712017 | Chemokine (CXC motif) receptor 4, fused to N-terminal half of ubiquitin. | 1191 | It's complicated | |||||
| BBa_K4025001 | This CDS expresses the intermembrane one-component protein ChiS | ChiS inter-membrane protein | 3390 | |||||
| BBa_K1908001 | Coding sequence for Homo sapien Cripto-1 membrane protein. | 767 | It's complicated | |||||
| BBa_I15010 | Cph8 | cph8 (Cph1/EnvZ fusion) | None | Forward | 2263 | In stock | ||
| BBa_K592000 | cph8 (Cph1/EnvZ fusion) | 2238 | In stock | |||||
| BBa_I728500 | CPX Terminal Surface Display Protein with Polystyrene-Binding Peptide | 654 | It's complicated | |||||
| BBa_J52035 | dnMyD88 | 420 | In stock | |||||
| BBa_K1909003 | EnvZ Signal Peptide and first Transmembrane Domain | 161 | It's complicated | |||||
| BBa_K1909005 | EnvZ Signal Transduction and Kinase Domains | 882 | It's complicated | |||||
| BBa_K259000 | fhuA - Outer membrane transporter for ferrichrome-iron | 2247 | It's complicated | |||||
| BBa_K976000 | Fibroblast Growth Factor-1 Receptor Coding Sequence | 2466 | Not in stock | |||||
| BBa_K259001 | fiu – Outer Membrane Ferric Iron Transporter | 2247 | It's complicated | |||||
| BBa_J58104 | Fusion protein Trg-EnvZ for signal transduction | 1485 | It's complicated | |||||
| BBa_K1897002 | HasR Membrane receptor coding sequence | Forward | 2700 | Not in stock | ||||
| BBa_K137112 | lamB | 1339 | In stock | |||||
| BBa_K1909002 | mTaz (Taz-derived mDAP receptor) | 1452 | It's complicated | |||||
| BBa_K4345007 | NarX | 1794 | ||||||
| BBa_K4345008 | NarX H399-E | 1797 | ||||||
| BBa_K1909004 | NOD1 LRR Domain | 969 | It's complicated | |||||
| BBa_C0082 | tar-envZ | Receptor, tar-envZ | LVA | Forward | 1516 | In stock | ||
| BBa_J58105 | Synthetic periplasmic binding protein that docks a vanillin molecule | 891 | In stock | |||||
| BBa_K845005 | TapZ engineered membrane receptor | 1449 | Not in stock | |||||
| BBa_K533007 | Tar receptor | 1662 | It's complicated | |||||
| BBa_K909008 | tetR-DBD-UVR8 fusion protein | 1674 | In stock | |||||
| BBa_K1315002 | The rpfC gene from Xanthomonas campestris | Forward | 2181 | It's complicated | ||||
| BBa_I712012 | TIR domain of TLR3 | 456 | In stock | |||||
| BBa_K389001 | VirA receptor | 2505 | It's complicated | |||||
| BBa_K143037 | YtvA Blue Light Receptor for B.subtilis | 789 | It's complicated |
Transporters
Transporters are membrane proteins responsible for transport of substances across the cell membrane.
| Name | Protein | Description | Tag | Direction | UniProt | KEGG | Length | Status |
|---|---|---|---|---|---|---|---|---|
| BBa_J07006 | malE | 1191 | It's complicated | |||||
| BBa_J07017 | FecA protein | 2325 | It's complicated | |||||
| BBa_J92000 | Lead Uptake Transporter | 1947 | Not in stock | |||||
| BBa_K1145001 | A transporter which is involved in transporting atrazine. | 1341 | It's complicated | |||||
| BBa_K1172401 | mtrCAB - gene cluster from S. oneidensis for cytochrome expression | 5112 | It's complicated | |||||
| BBa_K141000 | UCP1 | Ucp1 | 924 | In stock | ||||
| BBa_K141002 | Ucp 175 deleted | 921 | In stock | |||||
| BBa_K141003 | Ucp 76 deleted | 921 | In stock | |||||
| BBa_K1709005 | Ag43 | Ag43-YFP | 3843 | Not in stock | ||||
| BBa_K190028 | GlpF | 846 | In stock | |||||
| BBa_K2247002 | HXT2 glucose transpoter from S. cerevisiae | 1623 | It's complicated | |||||
| BBa_K2247003 | GFP tagged HXT2 glucose transpoter from S. cerevisiae | 2349 | It's complicated | |||||
| BBa_K2247004 | HXT5 glucose transpoter from S. cerevisiae | 1776 | It's complicated | |||||
| BBa_K2247005 | GFP tagged HXT5 glucose transpoter from S. cerevisiae | 2502 | It's complicated | |||||
| BBa_K2326001 | Glutamate/GABA antiporter | 1506 | It's complicated | |||||
| BBa_K2455003 | Cell-Penetrating USER Cassette | C-terminal hexa-histidine | Forward | 81 | It's complicated | |||
| BBa_K2455004 | YddG E. coli Tyr, Trp, Phe exporter | Forward | 885 | It's complicated | ||||
| BBa_K3016031 | TatC | Vibrio natriegens' native tatC CDS | 747 | Not in stock | ||||
| BBa_K3848008 | LLDP | 1652 | ||||||
| BBa_K4025002 | ChiP (chitoporin) | 1050 | ||||||
| BBa_K4214000 | Human Gastric Intrinsic Factor (hGIF) | 1211 | ||||||
| BBa_K4252005 | Phosphate ABC transporter membrane subunit PstS. | 1041 | ||||||
| BBa_K4252006 | Phosphate ABC transporter membrane subunit PstC. | 960 | ||||||
| BBa_K4252009 | Phosphate-specific transportor (Pst) | 3952 | ||||||
| BBa_K4781002 | Tat A - Tat pathway protein | 270 | ||||||
| BBa_K4781003 | Tat B - A protein of the TAT pathway complex | 516 | ||||||
| BBa_K4781004 | Tat C - A protein of the TAT pathway complex | 777 | ||||||
| BBa_K4781005 | Tat E - A protein of the TAT pathway complex | 204 | ||||||
| BBa_K629005 | trkD, a functional Kup (formerly TrkD) system took up Cs+ with a moderate rate and affinity | 1869 | In stock | |||||
| BBa_K633001 | Linker + EstA Membrane Protein | 876 | In stock |
 |
Jaume Forés Martos and [http://2008.igem.org/Team:Valencia 2008 Valencia iGEM team] designed and constructed several versions of the UCP1 transporter. |
Channels
Channels are made up of proteins that form transmembrane pores through which selected ions can diffuse.
| Name | Protein | Description | Tag | Direction | UniProt | KEGG | Length | Status |
|---|---|---|---|---|---|---|---|---|
| BBa_I746200 | FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane. | 2208 | In stock | |||||
| BBa_I765002 | ExbB membrane spanning protein in TonB-ExbB-ExbD complex [ Escherichia coli K12 ] | 735 | It's complicated | |||||
| BBa_I765003 | TonB ferric siderophore transport system, periplasmic binding protein TonB [ Pseudomonas entomophila | 735 | It's complicated | |||||
| BBa_K090000 | Glutamate gated K+ channel | 1194 | It's complicated | |||||
| BBa_K2263000 | mHCN2 - Hyperpolarization-activated cyclic nucleotide-gated 2 | 2592 | Not in stock | |||||
| BBa_K2263001 | hERG - human Ether-a-go-go-Related Gene K+ channel | 3480 | It's complicated | |||||
| BBa_K2263002 | Kir2.1 Voltage-gated potassium channel | 1293 | It's complicated | |||||
| BBa_K2263003 | α1G calcium ion channel | 6888 | Not in stock | |||||
| BBa_K284000 | Lactate Permease from Kluyveromyces lactis | 1873 | Not in stock | |||||
| BBa_K559000 | Halorhodopsin | 640 | It's complicated | |||||
| BBa_K559001 | Halorhodopsin under T7 promoter | 728 | It's complicated | |||||
| BBa_K864204 | OmpF | 1092 | In stock |
Pumps
Pumps are membrane proteins that can move substances against their gradients in an energy-dependent process known as active transport.
| Name | Protein | Description | Tag | Direction | UniProt | KEGG | Length | Status |
|---|---|---|---|---|---|---|---|---|
| BBa_J22101 | Lac Y gene | 1288 | In stock | |||||
| BBa_K079015 | LacY transporter protein from E. coli | 1254 | In stock | |||||
| BBa_K1020006 | YbhGFSR | 4971 | It's complicated | |||||
| BBa_K119003 | RcnA (YohM) | 833 | It's complicated | |||||
| BBa_K137001 | LacY | 1254 | In stock | |||||
| BBa_K1642001 | Codon-optimized Halorhodopsin with His-tag | 891 | Not in stock | |||||
| BBa_K2596005 | cscB (sucrose permease) from E. coli | 1248 | Not in stock |
Other membrane proteins
Other proteins and protein domains that are associated with the membrane but do not fall into one of the categories listed above are included here.
| Name | Protein | Description | Tag | Direction | UniProt | KEGG | Length | Status |
|---|---|---|---|---|---|---|---|---|
| BBa_I712024 | CD4 | 1374 | It's complicated | |||||
| BBa_K1172501 | Outer membrane porin OprF from Pseudomonas fluorescens | 1298 | It's complicated | |||||
| BBa_K133061 | CD4ecto | 1113 | It's complicated | |||||
| BBa_K136046 | envZ* | 1353 | It's complicated | |||||
| BBa_K1666000 | LsrA | LsrA of LuxS/AI-2 signaling pathway in Salmonalla | 1536 | In stock | ||||
| BBa_K1761001 | Outer Membrane Protein X (OmpX) with BamHI-linker and mNeonGreen | 1439 | In stock | |||||
| BBa_K1761002 | Outer Membrane Protein X (OmpX) with BsoBI-linker and NanoLuc | 1241 | In stock | |||||
| BBa_K1933000 | N-terminal domain of BclA protein fused to 6xHis tag | 84 | Not in stock | |||||
| BBa_K1933001 | INPNC fused to 6xHis tag | 978 | It's complicated | |||||
| BBa_K2127001 | 47 kDa subunit | Inducible High Expression His-Tagged Photosystem II CP47 subunit | Nickel Affinity Histine | 2071 | It's complicated | |||
| BBa_K2127002 | 47 kDa subunit | CP47 His-tagged with Lac Promoter | Nickel Affinity Histine | 1886 | It's complicated | |||
| BBa_K2127003 | psbT | 555 | It's complicated | |||||
| BBa_K2127004 | 47 kDa subunit | CP-47-HIS TAG | 1548 | Not in stock | ||||
| BBa_K2168000 | pBAD/araC - N(6xHis) Ag43 | 4511 | It's complicated | |||||
| BBa_K2168001 | pBAD/araC - (N-6xHis) - Ag43 - sfGFP | 5258 | It's complicated | |||||
| BBa_K227006 | puc BA coding region of R. sphaeroides | forward | 336 | It's complicated | ||||
| BBa_K2549006 | mouse Notch1 core | 978 | It's complicated | |||||
| BBa_K2549007 | mouse Notch1 core (extended) | 1089 | Not in stock | |||||
| BBa_K2549008 | human Notch1 core | 1008 | It's complicated | |||||
| BBa_K3013003 | mamC-FbFP BS2 fusion | 819 | Not in stock | |||||
| BBa_K3588020 | Synthetic Adhesin | 2397 | Not in stock | |||||
| BBa_K367000 | prhA coding sequence | 2316 | It's complicated | |||||
| BBa_K4035001 | CUP1 fused to Aga2 and tagged with a V5 epitope | Forward | 612 | Not in stock | ||||
| BBa_K4035002 | Dimerization of the copper metallothionein 1 : CUP1-(GGGGS)3-CUP1 | Forward | 405 | Not in stock | ||||
| BBa_K4035003 | Dimerization of the copper metallothionein 1 : CUP1-(GGGGS)4-CUP1 | Forward | 420 | |||||
| BBa_K4035004 | Dimerization of the copper metallothionein 1 : CUP1-(AP)7-CUP1 | Forward | 402 | |||||
| BBa_K4035005 | Dimerization of the copper metallothionein 1 : CUP1-(EAAAK)3-CUP1 | Forward | 405 | |||||
| BBa_K4035006 | Dimerization of the copper metallothionein 1 : CUP1-(EAAAK)4-CUP1 | Forward | 420 | |||||
| BBa_K4035007 | Dimerization of the copper metallothionein 1 : CUP1-GGGGSEAAAKGGGGS-CUP1 | Forward | 405 | |||||
| BBa_K4035008 | Dimerization of the copper metallothionein 1 : CUP1-GGGGS(EAAAK)2GGGGS-CUP1 | Forward | 420 | |||||
| BBa_K4765001 | intimin | 1968 | ||||||
| BBa_K4765008 | INPNC | 924 | ||||||
| BBa_K4765009 | LCA | 828 | ||||||
| BBa_K777113 | MotA | motA | 831 | In stock | ||||
| BBa_K777117 | MotB | motB | 927 | In stock | ||||
| BBa_K808027 | EstA : inactive fusion protein for bacterial surface expression | 1440 | In stock | |||||
| BBa_M12067 | E1 | 264 | Not in stock |