Difference between revisions of "Part:BBa K1073020"

Revision as of 01:03, 17 September 2015

Constitutively expressed chromoprotein aeBlue

This device is an enhanced construct of 2012 Uppsala's BBa_K864401. It consists of a strong promoter (BBa_J23100) combined with a RBS (BBa_B0032) and the encoding region of the chromoprotein aeBlue (BBa_K864401). This results in a constitutively high expression of aeBlue.

Usage and Biology

During cultivation, the chromoprotein aeBlue is expressed and stored intracellularly. The blue color of the protein can be seen by the naked eye, thus the chromoprotein can be used as a reporter to distinguish cells easily.

iGEM Team Braunschweig 2013:

Left: Liquid cultures of E. coli XL1 expressing chromoproteins amilGFP (BBa_K1073024), eforRed (BBa_K1073022) and aeBlue.

Right: Cell pellet of E. coli XL1 expressing aeBlue.

Exeter iGEM 2015:

As a part of our project, three chromoproteins BBa_K1431814, BBa_K1073022, and BBa_K1073020 were characterised as they could be used as potential indicators in our cell-free diagnostic test.

AeBlue was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD₄₅₈ was calculated, and a visual limit was determined.

Absorbance spectrum: Below is an absorbance spectrum for aeBlue between 350nm and 850nm. Peak maxima is seen around 595nm.

Standard curve - protein concentration vs. OD: Below is a standard curve for concentration of protein vs. OD (595 nm). This curve can be used to determine the concentration of eforRed based on its optical density (OD).

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 7
Illegal NheI site found at 30
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 7
Illegal NheI site found at 30
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 21: / Line 21: @@
 As a part of our project, three chromoproteins <partinfo>BBa_K1431814</partinfo>, <partinfo>BBa_K1073022</partinfo>, and <partinfo>BBa_K1073020</partinfo> were characterised as they could be used as potential indicators in our cell-free diagnostic test.
-AmajLime was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD<sub>458</sub> was calculated, and a visual limit was determined.
+AeBlue was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD<sub>458</sub> was calculated, and a visual limit was determined.
 <b>Absorbance spectrum:</b>
-Below is an absorbance spectrum for amajLime between 350nm and 850nm. Peak maxima is seen around 595nm.
+Below is an absorbance spectrum for aeBlue between 350nm and 850nm. Peak maxima is seen around 595nm.
 <center>https://static.igem.org/mediawiki/2015/4/4b/Exeter_aeBlue_spectrum.png</center>
 <b>Standard curve - protein concentration vs. OD:</b>
-Below is a standard curve for concentration of protein vs. OD (573 nm). This curve can be used to determine the concentration of eforRed based on its optical density (OD).
+Below is a standard curve for concentration of protein vs. OD (595 nm). This curve can be used to determine the concentration of eforRed based on its optical density (OD).
 <center>https://static.igem.org/mediawiki/2015/a/a0/Exeter_aeBlue_standard_curve.png</center>