Difference between revisions of "Part Names"
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| − | The following is a growing | + | __NOTOC__ |
| − | documentation of the [[An Introduction to BioBricks| | + | The following is a growing documentation of the [[An Introduction to BioBricks|BioBrick]] naming conventions. |
| − | + | ||
| − | + | ==BioBrick naming conventions== | |
| − | + | ||
| − | + | ||
| − | == | + | |
===General=== | ===General=== | ||
BBa = [[An Introduction to BioBricks|<b>B</b>io<b>B</b>rick]] [version] 'alpha' | BBa = [[An Introduction to BioBricks|<b>B</b>io<b>B</b>rick]] [version] 'alpha' | ||
| − | |||
===[https://parts.igem.org/wiki/index.php/Part_Types Part Types]=== | ===[https://parts.igem.org/wiki/index.php/Part_Types Part Types]=== | ||
{| | {| | ||
|- | |- | ||
| − | |[[Image:Part icon terminator.png]] | + | |[[Image:Part icon terminator.png]] , [[Image:Part icon dna.png]] |
| − | |BBa_<b><font color="red">B</font color="red"></b>... = | + | |BBa_<b><font color="red">B</font color="red"></b>... = Generic <b>b</b>asic parts such as [[Help:Terminators|Terminators]], [[Help:DNA_Itself|DNA]], and [[Help: Ribosome Binding Site|Ribosome Binding Sites]] |
|- | |- | ||
|[[Image:Part icon cds.png]] | |[[Image:Part icon cds.png]] | ||
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|- | |- | ||
| | | | ||
| − | |BBa_<b><font color="red">I</font color="red"></b>... = <b>I</b>AP [http:// | + | |BBa_<b><font color="red">I</font color="red"></b>... = <b>I</b>AP [http://iap03.igem.org 2003], [http://iap04.igem.org 2004] project parts |
|- | |- | ||
| | | | ||
| − | |BBa_<b><font color="red">J</font color="red"></b>... = [ | + | |BBa_<b><font color="red">J</font color="red"></b>... = [https://igem.org iGEM] project parts |
|- | |- | ||
|[[Image:Part icon tag.png]] | |[[Image:Part icon tag.png]] | ||
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|- | |- | ||
|[[Image:Part icon inverter.png]] | |[[Image:Part icon inverter.png]] | ||
| − | |BBa_<b><font color="red">Q</font color="red"></b>... = [[Help: | + | |BBa_<b><font color="red">Q</font color="red"></b>... = [[Help:Inverter|Inverter]] parts |
|- | |- | ||
|[[Image:Part icon regulatory.png]] | |[[Image:Part icon regulatory.png]] | ||
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|BBa_<b><font color="red">V</font color="red"></b>... = [[Help:Cell Strains|Cell strain]] parts | |BBa_<b><font color="red">V</font color="red"></b>... = [[Help:Cell Strains|Cell strain]] parts | ||
|} | |} | ||
| − | |||
===Plasmids=== | ===Plasmids=== | ||
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|[[Help:Plasmids|Plasmids]] have their own [[Help:Plasmids/Nomenclature|nomenclature]] | |[[Help:Plasmids|Plasmids]] have their own [[Help:Plasmids/Nomenclature|nomenclature]] | ||
|} | |} | ||
| + | |||
| + | ==Naming your bricks== | ||
| + | When you are [[Add a Part to the Registry|adding a BioBrick to the Registry]], you will need to do the following: | ||
| + | |||
| + | Choose a part name. Currently, most Registry users belong to a Group of some type, ''e.g.'', Guests, or one of the iGEM teams. The Registry accession numbers are assigned in blocks to these groups. For example, the iGEM Toronto team (see below) has been assigned block BBa_J11000 to BBa_J11999. The first step to creating a new part is knowing what you are going to name it, since this will categorize the part into one of the group bins. The Registry shows the next available part name, although any part name in range is valid. If you want the other members of the group to be able to edit the part, click the checkbox that allows this (optional). | ||
| + | [[Image:Basic part name.jpg]] | ||
| + | |||
| + | # Put the part name in the Selected Part Name box. | ||
| + | # Choose the best Part Type from the pull down menu. | ||
| + | |||
| + | <small>Note: Don't sweat this too much, just choose which category one might best describe your piece, tack on the corresponding naming convention. If you aren't sure what type of part it is, choose "Other". You can always update this later.(see below) and then go ahead and make it! | ||
| + | </small> | ||
Latest revision as of 19:00, 11 April 2012
The following is a growing documentation of the BioBrick naming conventions.
BioBrick naming conventions
General
BBa = BioBrick [version] 'alpha'
Part Types
 , 
|
BBa_B... = Generic basic parts such as Terminators, DNA, and Ribosome Binding Sites |
|
BBa_C... = Protein coding parts |
|
BBa_E... = Reporter parts |
|
BBa_F... = Signalling parts |
|
BBa_G... = Primer parts |
| BBa_I... = IAP [http://iap03.igem.org 2003], [http://iap04.igem.org 2004] project parts | |
| BBa_J... = iGEM project parts | |
|
BBa_M... = Tag parts |
|
BBa_P... = Protein Generator parts |
|
BBa_Q... = Inverter parts |
|
BBa_R... = Regulatory parts |
|
BBa_S... = Intermediate parts |
|
BBa_V... = Cell strain parts |
Plasmids
|
Plasmids have their own nomenclature |
Naming your bricks
When you are adding a BioBrick to the Registry, you will need to do the following:
Choose a part name. Currently, most Registry users belong to a Group of some type, e.g., Guests, or one of the iGEM teams. The Registry accession numbers are assigned in blocks to these groups. For example, the iGEM Toronto team (see below) has been assigned block BBa_J11000 to BBa_J11999. The first step to creating a new part is knowing what you are going to name it, since this will categorize the part into one of the group bins. The Registry shows the next available part name, although any part name in range is valid. If you want the other members of the group to be able to edit the part, click the checkbox that allows this (optional).
- Put the part name in the Selected Part Name box.
- Choose the best Part Type from the pull down menu.
Note: Don't sweat this too much, just choose which category one might best describe your piece, tack on the corresponding naming convention. If you aren't sure what type of part it is, choose "Other". You can always update this later.(see below) and then go ahead and make it!