Difference between revisions of "Part:BBa K1073020"
 
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As a part of our project, three chromoproteins <partinfo>BBa_K1431814</partinfo>, <partinfo>BBa_K1073022</partinfo>, and <partinfo>BBa_K1073020</partinfo> were characterised as they could be used as potential indicators in our cell-free diagnostic test.
 
As a part of our project, three chromoproteins <partinfo>BBa_K1431814</partinfo>, <partinfo>BBa_K1073022</partinfo>, and <partinfo>BBa_K1073020</partinfo> were characterised as they could be used as potential indicators in our cell-free diagnostic test.
  
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AmajLime was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD<sub>458</sub> was calculated, and a visual limit was determined.
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AeBlue was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD<sub>458</sub> was calculated, and a visual limit was determined.
  
 
<b>Absorbance spectrum:</b>
 
<b>Absorbance spectrum:</b>
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Below is an absorbance spectrum for amajLime between 350nm and 850nm. Peak maxima is seen around 595nm.
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Below is an absorbance spectrum for aeBlue between 400nm and 850nm. Peak maxima is seen around 595nm.
  
 
<center>https://static.igem.org/mediawiki/2015/4/4b/Exeter_aeBlue_spectrum.png</center>
 
<center>https://static.igem.org/mediawiki/2015/4/4b/Exeter_aeBlue_spectrum.png</center>
  
 
<b>Standard curve - protein concentration vs. OD:</b>
 
<b>Standard curve - protein concentration vs. OD:</b>
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Below is a standard curve for concentration of protein vs. OD (573 nm). This curve can be used to determine the concentration of eforRed based on its optical density (OD).
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Below is a standard curve for concentration of protein vs. OD (595 nm). This curve can be used to determine the concentration of aeBlue based on its optical density (OD).
  
 
<center>https://static.igem.org/mediawiki/2015/a/a0/Exeter_aeBlue_standard_curve.png</center>
 
<center>https://static.igem.org/mediawiki/2015/a/a0/Exeter_aeBlue_standard_curve.png</center>
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<span class='h3bb'>Sequence and Features</span>
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<b>Visual limit:</b>
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<partinfo>BBa_K1073022 SequenceAndFeatures</partinfo>
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Below is an image showing the intensity of colour at a specific amount of chromoprotein, from not visible to readily visible. The point of this characterisation is so that the level of protein expression/production required before a visual output in observed can be deduced.
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<center>https://static.igem.org/mediawiki/2015/1/18/Exeter_aeBlue_visual_limit.png</center>
  
 
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Latest revision as of 01:24, 19 September 2015

Constitutively expressed chromoprotein aeBlue

This device is an enhanced construct of 2012 Uppsala's BBa_K864401. It consists of a strong promoter (BBa_J23100) combined with a RBS (BBa_B0032) and the encoding region of the chromoprotein aeBlue (BBa_K864401). This results in a constitutively high expression of aeBlue.

Usage and Biology

During cultivation, the chromoprotein aeBlue is expressed and stored intracellularly. The blue color of the protein can be seen by the naked eye, thus the chromoprotein can be used as a reporter to distinguish cells easily.

Expressed chromoproteins.png AeBlue pellet.png

iGEM Team Braunschweig 2013:

Left: Liquid cultures of E. coli XL1 expressing chromoproteins amilGFP (BBa_K1073024), eforRed (BBa_K1073022) and aeBlue.

Right: Cell pellet of E. coli XL1 expressing aeBlue.

Exeter iGEM 2015:

As a part of our project, three chromoproteins BBa_K1431814, BBa_K1073022, and BBa_K1073020 were characterised as they could be used as potential indicators in our cell-free diagnostic test.

AeBlue was further characterised in three main ways; an absorbance spectrum was recorded, a standard curve of protein concentration vs. OD458 was calculated, and a visual limit was determined.

Absorbance spectrum: Below is an absorbance spectrum for aeBlue between 400nm and 850nm. Peak maxima is seen around 595nm.

Exeter_aeBlue_spectrum.png

Standard curve - protein concentration vs. OD: Below is a standard curve for concentration of protein vs. OD (595 nm). This curve can be used to determine the concentration of aeBlue based on its optical density (OD).

Exeter_aeBlue_standard_curve.png

Visual limit: Below is an image showing the intensity of colour at a specific amount of chromoprotein, from not visible to readily visible. The point of this characterisation is so that the level of protein expression/production required before a visual output in observed can be deduced.

Exeter_aeBlue_visual_limit.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]