DNA

Part:BBa_K4438909

Designed by: Diya Raj N   Group: iGEM22_IISER-Tirupati_India   (2022-10-12)


crp_trigger_5_midtrigger_phi29

crp_trigger_5_midtrigger_phi29 (BBa_K4438909) is a single-stranded DNA having 13 nucleotides. Figure 1A) shows the secondary structure and minimum free energy.


Usage and Biology

The part crp_trigger_5_midtrigger_phi29 (BBa_K4438909) has complete complementarity to the part Aptamer_crp (BBa_K4438900) and blocks the middle region of the CRP aptamer. Figure 1D) Shows the secondary structure of both parts hybridised at 37° Celsius. CRP binds with Aptamer_crp (BBa_K4438900) and displaces the crp_trigger_5_midtrigger_phi29 (BBa_K4438909) [1]. This part has complete complementarity with part crp_Target_5(BBa_K4438910). Phi 29 DNA extension polymerase extends the template strand and in-vitro transcription of the duplex forms multiple broccoli light-up aptamers. Different levels of CRP can be detected using all these three parts.

T--IISER-Tirupati India--hsa-crp-5.png Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

Liu, Z., Luo, D., Ren, F., Ran, F., Chen, W., Zhang, B., ... & Chen, Q. (2019). Ultrasensitive fluorescent aptasensor for CRP detection based on the RNase H assisted DNA recycling signal amplification strategy. RSC advances, 9(21), 11960-11967.

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