Generator

Part:BBa_K822003

Designed by: Jarle Pahr   Group: iGEM12_NTNU_Trondheim   (2012-09-25)

Constitutive YFP generator

Yellow Fluorescent Protein coding sequence (BBa_E0030) expressed under a constitutive promoter (BBa_J23100) for use as positive control in fluorescence measurement experiments.


Testing

The part was tested using a Tecan Infinite 200 Pro plate reader for fluorescence measurements. Using this instrument, using excitation and emission wavelengths of 514 and 544 nm respectively was found to be most suitable. A culture of E. coli strain DH5a containing the part was incubated for ~24 h at 37 C with shaking. Cells containing a construct with GFP (BBa_K082003) under the Jen1 promoter (BBa_K284002) were not expected to express GFP under the conditions and were used as a negative control. Fluorescence was measured using 100 uL samples in Nunclon 96-well flat bottom black polystyrol plates (raw data)

YFP fluorescence 1.png

The fluorescence measurements above are not corrected for cell concentration (OD).Further experiments were made in connection with testing of oxygen-sensitive promoters, with averaging of readings and corrections made for the measured OD of the cell cultures that were sampled. These experiments failed to show activity by the oxygen-sensitive promoters, but provided further evidence for expression of YFP under the constitutive promoter. (raw data).

YFP fluorescence2.png


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
//classic/reporter/constitutive
Parameters
emissionYFP
emit527
excite514
proteinEYFP
strainDH5a
tagNone