Coding

Part:BBa_K1031442

Designed by: He Shuaixin   Group: iGEM13_Peking   (2013-09-09)
Revision as of 05:09, 25 September 2013 by Psyche (Talk | contribs)

J23109-HcaR


Characterization

In order to fine-tune the performance of HcaR biosensor, we constructed a library of Pc constitutive promoters at different intensity. BBa_K1031442 is composed of three elements, the constitutive Pc promoter J23109[1], coding sequence of HcaR and terminator B0015[2]. (Fig 1)

Fig 1 Construction of biosensor circuit Ph/J23109-HcaR


Sequence and Features

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 892
    Illegal AgeI site found at 565
  • 1000
    COMPATIBLE WITH RFC[1000]


Data shown

Induction ratio of HcaR biosensor library test utilizes different Pc promoters, collocating with RBS (Ribosome Binding Site) at different intensity to control the expression of HcaR. The dashed box refers to data for Ph/J23109-HcaR biosensor circuit (Fig 2) in collocation with RBS B0034.

Fig 2 Induction ratio of HcaR biosensor library test. Horizontal axis stands for different HcaR biosensor with Pc promoters of different strength. The expression strength of these constitutive promoters, J23113, J23109, J23114, J23105, J23106 is 21, 106, 256, 623, and 1185, respectively, according to the Partsregistry. Four kinds of aromatics shown with different color intensities, were tested following Test Protocol 1 [1]. Vertical axis represents the ON-OFF induction ratio. The dashed box refers to performance for Ph/J23109-HcaR biosensor circuit.



[edit]
Categories
//cds/transcriptionalregulator/activator
//chassis/prokaryote/ecoli
//function/regulation/transcriptional
Parameters
biology