Regulatory

Part:BBa_K2114000

Designed by: Wladislaw Stroukov   Group: iGEM16_Freiburg   (2016-10-06)
Revision as of 00:55, 15 October 2016 by WladStr (Talk | contribs) (→‎Characterization)


PCotYZ-RBS

PCotYZ promoter from Bacillus subtilis with ribosome binding site.

Usage and Biology

The PCotYZ promoter from Bacillus subtilis plays an important role in the sporulation of B. subtilis. The Promoter is located in the cotVWXYZ gene cluster and drives the expression of the late-stage spore crust proteins CotY and CotZ[1]. We included the naturally occurring ribosome binding site for cotZ to the promoter PCotYZ (BBa_K823031) while maintaining the BioBrick compatibility. This enables the expression of genes that are not containing a ribosome binding site. The improved promoter can be used for the 3A assembly with a coding region and cloned into an integration vector. The resulting device enables the transformation of B. subtilis for integration and expression of desirable genes.

[Ref to old part]

Cloning strategy of the promoter improvement. PCotYZ was amplified with primers containing extensions in order to introduce the ribosome binding site. The resulting fragment was digested with XbaI and PstI and ligated into the linearized pSB1C3 vector with the corresponding overhangs.





















Characterization

This promoter was used for the expression of fusion constructs in the spores of B. subtilis. The respective construct was assembled into an integration vector [REF: BioBrickBox] alongside with the PCotYZ-RBS promoter by 3A assembly.

Expression of genes driven by PCotYZ-RBS

The promoter PCotYZ-RBS was cloned alongside with BBa_K214001 into the integration vector pBS1C4 by 3A assembly. After transformation the cells were selected by chloramphenicol resistance and screened for the disruption of the amyE gene on starch agar plates. Subsequently the positive clones were further cultivated and sporulation was induced by nutrient starvation. The resulting spores were purified from vegetative cells with lysozyme and analyzed by SDS-PAGE and Western blotting. The immunostaining with anti-HA antibodies resulted in the visualization of the expected band at approximately 33 kDa. Additional bands at higher molecular weight were hypothesized to be results from the high cross-linking of spore coat proteins responsible for the enormous rigidity and stability of the spores [REF].


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Flow cytometry analysis

The gene expression driven by the PCotYZ-RBS promoter for the display of fusion proteins on the surface of B. subtilis spores was analyzed by flow cytometry. After transformation and induction of sporulation the resulting spores were purified and stained with an anti HA antibody conjugated to AlexaFluor® 647 (Cell Signaling Technology®). The antibody could only access the surface-localized epitopes of the expressed fusion genes and could confirm the successful display of heterologous proteins on the surface of B. subtilis spores.

[FACS image]

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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