Difference between revisions of "Part:BBa E1010:Experience"

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===Applications of BBa_E1010===
 
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<I>Carnegie_Mellon 2013</I><br />
 
<I>Carnegie_Mellon 2013</I><br />
 
<b> Characterization of the Photostability of mRFP1</b>
 
<b> Characterization of the Photostability of mRFP1</b>
  
[[Image:MRFP1.png|center|thumb|400px|''Photobleaching curve of mRFP1 with a HBO100 mercury-arc lamp"]]
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[[Image: MRFP1.png|center|thumb|400px|''Photobleaching curve of mRFP1 with a HBO100 mercury-arc lamp"]]  
 
XL10 Ultracompetent cells were transformed with <partinfo>E1010</partinfo> with <partinfo>R0010</partinfo> as the wild-type lac promoter and induced overnight with IPTG.The overnight was bleached for 180 minutes with HBO100 (100W Mercury-arc lamp). Fluorescence data was taken using a Tecan Safire II with the parameters shown in Table 3. Fluorescence values are shown in Table 4. <br />
 
XL10 Ultracompetent cells were transformed with <partinfo>E1010</partinfo> with <partinfo>R0010</partinfo> as the wild-type lac promoter and induced overnight with IPTG.The overnight was bleached for 180 minutes with HBO100 (100W Mercury-arc lamp). Fluorescence data was taken using a Tecan Safire II with the parameters shown in Table 3. Fluorescence values are shown in Table 4. <br />
 
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Revision as of 17:41, 3 September 2013

This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

RANDOM SEQUENCE FOUND WITHIN PART

CGCTGATAGTGCTAGTGTAGATCGC is found after the RFP stop codon and before the BioBricks suffix. Should not affect transcription or translation of RFP, but good to keep note of it especially in analyzing sequencing results. (KP of siGEM)

  • Please note that the above sequence is the old "barcode" sequence added to all of the original CDSs in the early BioBrick part collections. I.e., it's not a random sequence. See https://parts.igem.org/cgi/htdocs/barcodes.cgi for more information (D. Endy).
    • FURTHER NOTE The Registry is not displaying barcodes on any of the original parts. The presented sequence information is wrong. This is a serious bug in the Registry that need to be fixed (D. Endy). Drew 14:34, 1 November 2010 (UTC)

Applications of BBa_E1010

Example.jpg===User Reviews=== UNIQ620cadfb2137a81c-partinfo-00000000-QINU

••••

KAIST_iGEM_2012

Figure 1. E.coli strain MG1655 expressing BBa_E1010 under control of BBa_K907005 after overnight culture. 3mL culture with M9 media in 14ml round bottom tube(left), and centrifuged cells in eppendorf tube(right). The expression of BBa_1010 is clearly observed with naked eye after overnight culture.


We recommend you to measure the emission wavelenth at 619nm. Because the maximum excitaion and emission wavelenth are too close to each other, the signal overflows. You can get more precise results with our recommendations.
BBa_E1010 was successfully used to produce mRFP in E.coli strain MG1655 in LB or M9 minimal media under the control of promoter-BBa_J23119 and RBS-BBa_B0034 in the Dual Phase Protein Generator(mRFP default), BBa_K907005


;
•••

DTU_igem_2010

Characterization of RFP BBa_E1010
We have characterized RFP BBa_E1010 in two different chassis to test the compatibility and the possible range of expressions before limitations in the cell metabolism.

Method
We have made constructs with a synthetic promoter library (SPL) in front of the E1010, by using BBa_I13507 and the plasmid backbone pSB3T5. For information on design of an SPL compatible with the BB standard see [http://bbf.openwetware.org/RFC.html#BBF_RFC_63:_DTU_Synthetic_Promoter_Library_Standard BBF RFC63]. We have benchmarked the relative promoter strength range achieved from the SPL to the standard promoter BBa_J23101, by calculating the relative promoter strength in vivo as suggested in [http://bbf.openwetware.org/RFC.html#BBF_RFC_19:_Measuring_the_Activity_of_BioBrick.E2.84.A2_Promoters_Using_an_In_Vivo_Reference_Standard BBF RFC 19]. For further explanation on methods see our [http://2010.igem.org/Team:DTU-Denmark iGEM_DTU_2010 wiki].

Results
We show that the RFP E1010 can be expressed with the following results

  • In XL1blue with an RPU range form 0 to at least 1,13 RPU.
  • In DHA5&alpha with an RPU range from 0 to 1,35 RPU.
Graph2 XL1BLUE illustrates the variation in promoter strengths of the SPL mapped against the reference promoters. PM corresponds to BBa_J23101, PS corresponds to BBa_J23100 and PW corresponds to BBa_J23116.
Graph3 XL1BLUEillustrates the specific activities of the SPL promoters ranked together with the reference promoters.
Graph4 DH5aillustrates the variation in promoter strengths of the SPL mapped against the reference promoters. PM corresponds to BBa_J23101, PS corresponds to BBa_J23100 and PW corresponds to BBa_J23116.
Graph5 DH5a illustrates the specific activities of the SPL promoters ranked against the reference promoters.

Table 1 shows the specific activities and RPUs calculated for all the SPL constructs run in BioLector in XL1-blue

ConstructSpecific ActivityRPU
BBa_J231010.07951.00
SPL_RFP010.005780.0727
SPL_RFP020.04180.526
SPL_RFP030.06120.770
SPL_RFP04-0.00027-0.00340
SPL_RFP050.04180.526
SPL_RFP060.08561.08
SPL_RFP070.01340.168
SPL_RFP080.05340.672
SPL_RFP090.06380.803
SPL_RFP100.002600.0327
SPL_RFP110.09001.13
SPL_RFP120.06000.755
SPL_RFP130.07540.949
SPL_RFP140.007950.100
SPL_RFP160.009590.121


Table 2 shows the specific activities and RPUs calculated for all the SPL constructs run in BioLector in DH5alpha

ConstructSpecific ActivityRPU
BBa_J231010.07121.00
SPL_RFP-D010.07151.00
SPL_RFP-D020.09591.35
SPL_RFPD-030.07811.10
SPL_RFPD-040.05310.746
SPL_RFPD-050.07321.03
SPL_RFPD-060.05520.775
SPL_RFPD-070.03580.503
SPL_RFPD-080.06680.938
SPL_RFPD-090.02540.357
SPL_RFPD-100.01650.231
SPL_RFPD-11-0.00284-0.399
SPL_RFPD-120.002760.0387
SPL_RFPD-130.07761.09
SPL_RFPD-140.00180.0253
SPL_RFPD-150.003020.0424
;

Antiquity

This review comes from the old result system and indicates that this part did not work in some test.

Nkessler

We successfully used this part for a read out system, e.g. in BBa_K389016. Additionally we compared it with a luciferase: BBa_K389004.

•••••

Carnegie_Mellon 2013
Characterization of the Photostability of mRFP1

Photobleaching curve of mRFP1 with a HBO100 mercury-arc lamp"

XL10 Ultracompetent cells were transformed with BBa_E1010 with BBa_R0010 as the wild-type lac promoter and induced overnight with IPTG.The overnight was bleached for 180 minutes with HBO100 (100W Mercury-arc lamp). Fluorescence data was taken using a Tecan Safire II with the parameters shown in Table 3. Fluorescence values are shown in Table 4.

Table 3 Tecan Safire II Parameters

Excitation (nm)585
Emission (nm)610
Excitation bandwidth (nm)10
Emission bandwidth (nm)10
Gain129
Number of reads10
Integration Time (microseconds)40


Table 4 Shows the fluorescence data over time during photobleaching.

Time (minutes)Fluorescence (RFU)
042598
2037616
4033749
6029059
8025680
10021985
12019442
14017031
16015738
18013741

UNIQ620cadfb2137a81c-partinfo-0000000F-QINU