Difference between revisions of "Part:BBa K389016:Design"
(→Design Notes) |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 7: | Line 7: | ||
===Design Notes=== | ===Design Notes=== | ||
* The ''virA'' gene is under the control a medium strong constitutive promoter so there is enough VirA receptor expressed but not too much so the cell suffers from the expression (VirA is a membrane protein) | * The ''virA'' gene is under the control a medium strong constitutive promoter so there is enough VirA receptor expressed but not too much so the cell suffers from the expression (VirA is a membrane protein) | ||
| − | * The ''virG'' gene is mutated so it works without an ''rpoA'' subunit from ''Agrobacterium tumefaciens'' (YC Jung ''et al.'', 2004) | + | |
| − | * | + | * The ''virG'' gene is mutated so it works without an ''rpoA'' subunit from ''Agrobacterium tumefaciens'' ([http://www.springerlink.com/content/wmq06kua5qkma1au/ YC Jung ''et al.'', 2004]) |
| − | ** | + | |
| − | * mRFP gene to show the activity of the ''vir'' promoter | + | * Double terminator (forward) to keep expression of mRFP by the constitutive promoter low. |
| − | * | + | ** Double terminator <partinfo>BBa_B0017</partinfo> instead of <partinfo>BBa_B0015</partinfo> because of problems mentioned with <partinfo>BBa_B0012</partinfo>. |
| + | |||
| + | * mRFP gene to show the activity of the ''vir'' promoter. | ||
| + | |||
| + | * This BioBrick is for measuring the natural VirA/G system. | ||
| + | |||
===Source=== | ===Source=== | ||
* ''virA'' from ''A. tumefaciens'' C58 (<partinfo>K389001</partinfo>) | * ''virA'' from ''A. tumefaciens'' C58 (<partinfo>K389001</partinfo>) | ||
| + | |||
* ''virG'' gene synthesized by Mr. Gene (<partinfo>BBa_K389002</partinfo>) | * ''virG'' gene synthesized by Mr. Gene (<partinfo>BBa_K389002</partinfo>) | ||
| + | |||
* ''vir'' promoter from ''A. tumefaciens'' C58 (<partinfo>BBa_K389003</partinfo>) | * ''vir'' promoter from ''A. tumefaciens'' C58 (<partinfo>BBa_K389003</partinfo>) | ||
| − | * | + | |
| + | * Constitutive promoter, RBS, double terminator and mRFP from parts.igem (<partinfo>BBa_J23110</partinfo>, <partinfo>B0034</partinfo>, <partinfo>BBa_B0017</partinfo>, <partinfo>E1010</partinfo>) | ||
| + | |||
===References=== | ===References=== | ||
| + | YC Jung ''et al.'' (2004) [http://www.springerlink.com/content/wmq06kua5qkma1au/ Mutants of ''Agrobacterium tumefaciens virG'' Gene That Activate Transcription of ''vir'' Promoter in ''Escherichia coli''], ''Current Microbiol'' 49:334-340. | ||
Latest revision as of 16:08, 25 October 2010
VirA/G reporter device mRFP
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30
Illegal NheI site found at 647
Illegal NheI site found at 2581
Illegal NheI site found at 2604 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 1632
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 4260
Illegal AgeI site found at 4372 - 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI.rc site found at 1768
Design Notes
- The virA gene is under the control a medium strong constitutive promoter so there is enough VirA receptor expressed but not too much so the cell suffers from the expression (VirA is a membrane protein)
- The virG gene is mutated so it works without an rpoA subunit from Agrobacterium tumefaciens ([http://www.springerlink.com/content/wmq06kua5qkma1au/ YC Jung et al., 2004])
- Double terminator (forward) to keep expression of mRFP by the constitutive promoter low.
- mRFP gene to show the activity of the vir promoter.
- This BioBrick is for measuring the natural VirA/G system.
Source
- virA from A. tumefaciens C58 (BBa_K389001)
- virG gene synthesized by Mr. Gene (BBa_K389002)
- vir promoter from A. tumefaciens C58 (BBa_K389003)
- Constitutive promoter, RBS, double terminator and mRFP from parts.igem (BBa_J23110, BBa_B0034, BBa_B0017, BBa_E1010)
References
YC Jung et al. (2004) [http://www.springerlink.com/content/wmq06kua5qkma1au/ Mutants of Agrobacterium tumefaciens virG Gene That Activate Transcription of vir Promoter in Escherichia coli], Current Microbiol 49:334-340.