Difference between revisions of "Part:BBa K3190101"

(Usage and Biology)
(Usage and Biology)
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[[File:ovulaid9.png|500px]]
 
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<small> Figure 2: <b> Colony PCR of yeast transformed with 5 assembler construct |</b> Specific yeast genotyping primers were used for the PCR reaction. PCR products were separated by electrophoresis on 1% agarose gel. The sizes of the molecular weight standards are shown on the left.  Lanes 1-10 correspond to individual colonies. Expected band sizes are of 1000 bp, indicating successful chromosomal integration. Band sizes of 1500 bp indicate unsuccesful chromosomal integration. </small>  
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<small><b> Figure 2:  Colony PCR of yeast transformed with 5 assembler construct |</b> Specific yeast genotyping primers were used for the PCR reaction. PCR products were separated by electrophoresis on 1% agarose gel. The sizes of the molecular weight standards are shown on the left.  Lanes 1-10 correspond to individual colonies. Expected band sizes are of 1000 bp, indicating successful chromosomal integration. Band sizes of 1500 bp indicate unsuccesful chromosomal integration. </small>  
  
  
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<small><b>Figure 3: Western blot of insoluble vs soluble cellular protein  | </b> Western blot was carried out using anti-GFP antibodies. Yeast expressing empty vectors and GFP was used as negative and positive control respectively. Two replicate yeast cultures were used for the western blot. Expected band sizes are of 71 kDa.  </small>
 
<small><b>Figure 3: Western blot of insoluble vs soluble cellular protein  | </b> Western blot was carried out using anti-GFP antibodies. Yeast expressing empty vectors and GFP was used as negative and positive control respectively. Two replicate yeast cultures were used for the western blot. Expected band sizes are of 71 kDa.  </small>
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To further verify expression of GPER-Li-sfGFP, and examine intracellular localization of the receptor, confocal microscopy was performed.
 
To further verify expression of GPER-Li-sfGFP, and examine intracellular localization of the receptor, confocal microscopy was performed.
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<small><b>Figure 4: A) Bright field empty vector. B) Fluorescence filter empty vector. C) Bright field GPER-sfGFP. D) Fluorescence filter GPER-sfGFP.  </small>
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<small><b>Figure 4: Confocal microscopy of transformed yeast cells.</b> | A) Bright field empty vector. B) Fluorescence filter empty vector. C) Bright field GPER-sfGFP. D) Fluorescence filter GPER-sfGFP.  </small>
  
 
We transformed yeast with GPER-sfGFP construct to verify receptor expression, where the sfGFP is tagged to the C-terminal of the receptor. First, we performed western blot to verify GPER expression, then we performed confocal microscopy to see intracellular localization of GPER-sfGFP. Results from western blot and confocal microscopy confirmed our GPER expression.
 
We transformed yeast with GPER-sfGFP construct to verify receptor expression, where the sfGFP is tagged to the C-terminal of the receptor. First, we performed western blot to verify GPER expression, then we performed confocal microscopy to see intracellular localization of GPER-sfGFP. Results from western blot and confocal microscopy confirmed our GPER expression.
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[[File:ovulaid24.png|500px]]
 
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<small> Figure 5: <b> Fluorescence intensity measurement in Relative Fluorescence Units (RFU) |</b> Y axis indicates fluorescence intensity in RFU, while the X axis indicates the increasing estradiol concentrations in picomoles. GPER biosensor (orange line) indicates the fluorescence (RFU) from the yeast cells with the 5 assembler cassette, induced with increasing concentrations of estradiol. Empty vector (blue line) indicates the fluorescence (RFU) from the yeast cells with empty vectors induced with increasing concentrations of estradiol.
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<small><b> Figure 5:  Fluorescence intensity measurement in Relative Fluorescence Units (RFU) |</b> Y axis indicates fluorescence intensity in RFU, while the X axis indicates the increasing estradiol concentrations in picomoles. GPER biosensor (orange line) indicates the fluorescence (RFU) from the yeast cells with the 5 assembler cassette, induced with increasing concentrations of estradiol. Empty vector (blue line) indicates the fluorescence (RFU) from the yeast cells with empty vectors induced with increasing concentrations of estradiol.
 
  </small>
 
  </small>
  

Revision as of 13:06, 20 October 2019


G protein-coupled estrogen receptor (GPER/GPR30) CDS


G protein-coupled estrogen receptor (GPR30, also referred to as GPER), an intracellular transmembrane estrogen receptor, was identified in 2005 (Revankar, 2005). It has been found to localise to the endoplasmic reticulum and specifically binds to estrogen and its derivatives. The interaction between estradiol and the membrane-associated receptor triggers non-genomic signalling; intracellular calcium mobilization and synthesis of phosphatidylinositol 3,4,5-trisphosphate in the nucleus. For our project, the gene encoding for the receptor was codon optimized and coupled to strong constitutive promoter pCCW12 for heterologous expression in S. cerevisiae.

Usage and Biology

For our study, we used the GPER to construct a biosensor. Here the GPER was integrated into the chromosome of S. cerevisiae , along with three other genes (see below) using a multiplex assembler system, allowing for simultaneous integration of multiple modules at the same time (Figure 1). The backbones we used were designed to integrate into S. cerevisiae chromosome 10, site 3. Below figure explains the concept of the modular system:

5-module-system.jpeg

Figure 1: Overview of the multiplex assembler system with 5 modules | The system is designed such that it integrates into the genome of S. cerevisiae chromosome 10, site 3 by homologous recombination.

In total our biosensor contained the following modules:

  • Module 1: GPER
  • Module 2: Chimeric Gαs (BBa_K3190201)
  • Module 3: Transcription factor STE12 (BBa_K3190203)
  • Module 4: This module was kept empty in this construct
  • Module 5: Reporter module ZsGreen (BBa_K3190204)

This construct is our biosensor, which should produce a signal when estrogen is detected.

Chromosomal integration

For our studies, GPER-Li-sfGFP was integrated into the yeast chromosome, and correct insertion was verified using colony PCR.


Ovulaid9.png

Figure 2: Colony PCR of yeast transformed with 5 assembler construct | Specific yeast genotyping primers were used for the PCR reaction. PCR products were separated by electrophoresis on 1% agarose gel. The sizes of the molecular weight standards are shown on the left. Lanes 1-10 correspond to individual colonies. Expected band sizes are of 1000 bp, indicating successful chromosomal integration. Band sizes of 1500 bp indicate unsuccesful chromosomal integration.


Expression of G protein-coupled estrogen receptor

Expression of the GPER-Li-sfGFP was confirmed by performing western blot, using anti GFP antibody. The results are depicted below:

Ovulaid21.png

Figure 3: Western blot of insoluble vs soluble cellular protein | Western blot was carried out using anti-GFP antibodies. Yeast expressing empty vectors and GFP was used as negative and positive control respectively. Two replicate yeast cultures were used for the western blot. Expected band sizes are of 71 kDa.


To further verify expression of GPER-Li-sfGFP, and examine intracellular localization of the receptor, confocal microscopy was performed.

Ovulaid19.png

Figure 4: Confocal microscopy of transformed yeast cells. | A) Bright field empty vector. B) Fluorescence filter empty vector. C) Bright field GPER-sfGFP. D) Fluorescence filter GPER-sfGFP.

We transformed yeast with GPER-sfGFP construct to verify receptor expression, where the sfGFP is tagged to the C-terminal of the receptor. First, we performed western blot to verify GPER expression, then we performed confocal microscopy to see intracellular localization of GPER-sfGFP. Results from western blot and confocal microscopy confirmed our GPER expression.


Bioactivity assay with estrogen

Inorder to test the functionality of our GPER biosensor, we induced our cells with increasing concentrations of estrogen hormone. Here, successful induction leads to activation of the reporter gene ZsGreen, resulting in a fluorescent signal. The fluorescence was measured using a plate reader.

Ovulaid24.png

Figure 5: Fluorescence intensity measurement in Relative Fluorescence Units (RFU) | Y axis indicates fluorescence intensity in RFU, while the X axis indicates the increasing estradiol concentrations in picomoles. GPER biosensor (orange line) indicates the fluorescence (RFU) from the yeast cells with the 5 assembler cassette, induced with increasing concentrations of estradiol. Empty vector (blue line) indicates the fluorescence (RFU) from the yeast cells with empty vectors induced with increasing concentrations of estradiol.


From the results of the bioactivity assay, not much could be concluded because there was no significant difference in fluorescence between the cells transformed with empty vector and the biosensor when induced with estradiol. This indicates that the biosensor does not work as intended with the above mentioned estradiol concentrations, so it has to be further evaluated with even higher concentrations of the estradiol hormone.







Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 750