Part:BBa_K265008

Ice Nucleation Protein NC

The ice-nucleation protein (INP) from Pseudomonas syringae, is used by its natural host to nucleate ice formation and is implicated in P. syringae associated pathogenesis. INP and a truncated derivative lacking the central domain (INPNC) have been used extensively for displaying proteins on the surface of E. coli (1,3). For instance, carboxymethylcellulase and AldO have been successfully displayed on the surface of E. coli using INPNC (1, 3).

Park et al. have shown that INPNC when fused to the phaZ1 gene, including its signal sequence, can serve as a suitable surface delivery and secretion device of the otherwise toxic phaZ1 gene product (2).

This part was synthesized by Mr. Gene with codon optimization and subsequently transferred into vector pSB1AK3. As it is expected that this part will be used in the context of the fusion protein, the prefix and suffix for this part are consistent with the BBF RCF-12 standard.

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We have proposed to build and test a general protein secretion system modeled after that developed by Park et al. in which a fusion of INPNC and the signal sequence from the phaZ1 gene are used to secrete any target protein.

We have modified this protein to be consistent with BBF RFC-12 Standard. We have submitted this part to the parts registry as part BBa_K265008.

This part is authored by Richard Hauser, Tim Fenton, Willis Wong, Lydia Kwon, Jimmy Huang, and Pantea Gheibi.

This protein is used for displaying proteins of different sizes on the surface of the cell.

Team:XMU-China

Usage and design

Engineering OMVs for treating and preventing AHPND caused by the pathogen V. parahaemolyticus are a significant part of OMEGA project (Operable Magic to Efficiently Getting over AHPND). Based on the efforts of our previous projects in 2020 (AnTea-Glyphosate) and 2021 (SALAGE), we further developed the surface display system on the OMVs released by the engineered bacteria. The usage of cargo proteins was no more limited to enzymes that are usually utilized to catalyze series bio-chemical reactions, since some receptors or ligands involved in complex protein-protein interaction (PPI) were selected as the cargo candidates. This year, we chose two classic anchor proteins, ClyA and INPNC, to construct the display cassette with various cargo proteins including rFET (receptor), rLvAPN1 (receptor), TTPA (ligand) and TTPB (ligand) (Fig. 1). On one hand, with the receptors displayed, OMVs will gain the function of neutralizing toxins secreted by V. parahaemolyticus. On the other hand, with the assistance of ligands displayed on the surface, OMVs will become a special vector to deliver antimicrobials for the specific pathogen. In summary, we have taken a step closer to the collections of extracellular functional elements (EFE), combining the OMVs, secretion systems and surface display systems which we have been dedicated to since 2020. Learn more information from our Design page.

Fig. 1 Graphic description of the expression gene circuits for display cassette designed in OMEGA project.

The isolation and purification of OMVs can be achieved in many ways. Nathan et al. obtained the purified OMVs via immobilized metal affinity chromatography (IMAC) using a His-tag mutant (1). In order to purify OMVs,we added a his-tag (6×His) at the C-terminal of ClyA. We used both BBa_I0500 and BBa_B0034 to construct the expression system and obtained the composite part BBa_K4195136, which are assembled into the vector pSB1C3 by standard BioBrick assembly. The constructed plasmids were transformed into E. coli BL21(DE3), then the positive transformants were selected by chloramphenicol and confirmed by colony PCR and sequencing.

Characterization

1.Identification

After transforming the plasmid into E. coli BL21(DE3), colony PCR was used to verify that the plasmid was correct. Target bands (2680 bp) can be observed at the position between 3000 bp and 2000 bp (Fig. 2).

Fig. 2 DNA gel electrophoresis of the colony PCR products of BBa_K4195135_pSB1C3.

2.Immunofluorescence (IF)

The culture was incubated overnight. Then the FITC-labeled anti-His-Tag antibody was used to target the His-tag (6×His) displayed via ClyA, followed by measuring the fluorescence intensity (λ_Ex= 492 nm, λ_Em = 528 nm) to OD₆₀₀ of the culture.
The results showed that the ratio of fluorescence intensity to OD₆₀₀ of positive control (bacteria harboring BBa_K4195135) is higher than that of negative control (bacteria harboring BBa_K4195119) (Fig. 3), which indicated that these two surface display systems can work well.

Fig. 3 Fluorescence intensity/OD₆₀₀ of E. coli whether express the anchor protein or not (p=0.0055).

Reference

1. N. J. Alves, K. B. Turner, K. A. DiVito, M. A. Daniele, S. A. Walper, Affinity purification of bacterial outer membrane vesicles (OMVs) utilizing a His-tag mutant. Res. Microbiol. 168, 139-146 (2017).

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal NgoMIV site found at 405
  
• 1000
  COMPATIBLE WITH RFC[1000]