Device

Part:BBa_K4407014

Designed by: Leyu Xu   Group: iGEM22_Worldshaper-Nanjing   (2022-10-05)


Plac-dps-aceE,Coexpression of dps and aceE in response to lactose

This part is responsible for co-expressing dps and aceE proteins in response to lactose under the control of a Plac promotor and a terminator. It is composed of BBa_K4119006 (Plac), BBa_K4407001 (dps), BBa_K4407002 (aceE), and BBa_K3585002 (terminator). dps protects the bacteria from oxidative damage. It protects DNA against oxidative damage by binding with Fe2+ to prevent it from reacting with H2O2 (Fenton’s reaction). aceE protein is a component of the PDH complex and catalyzes the conversion of pyruvate to acetyl-CoA and CO2. It can function well in aerobic environment. In our project, we used this device to construct facultative anaerobic Clostridium tyrobutyricum (C. tyrobutyricum). This device combines the function of the two proteins, enhancing viability in aerobic environment by protecting DNA and substituting the main metabolic enzyme PFOR which is inactivated under aerobic condition with PDH in the presence of oxygen.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 368
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 368
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 368
    Illegal BglII site found at 428
    Illegal BglII site found at 2942
    Illegal BglII site found at 3350
    Illegal BamHI site found at 1902
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 368
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 368
    Illegal NgoMIV site found at 3972
    Illegal AgeI site found at 2683
  • 1000
    COMPATIBLE WITH RFC[1000]

Results

The Plac promoter fragment and linearized pMTL-dps-aceE vector were ligated by the Gibson assembly method. Then, we ran a colony PCR for the transformed bacterial colony (E. coli JM109), inoculated the positive bacterial colonies, and extracted the plasmids, which were then confirmed to be pMTL-Plac-dps-aceE by agarose gel electrophoresis and gene sequencing (Figure 1). The promotor vector was also confirmed to be Plac promoter with the same method, as shown in figure 2.

Figure 1. Gel electrophoresis confirmation of aceE(2697bp)
Figure 2. Gel electrophoresis confirmation of vector (Plac)
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