Plasmid_Backbone
His3::NatM

Part:BBa_K3271007

Designed by: Setti Belhouari   Group: iGEM19_uOttawa   (2019-10-13)


His3::NatMX-EXSP pSB1K3

The prefix and suffix (EXSP) of the pSB1K3 backbone are flanked by the upstream and downstream homology sequences of the His3 locus from S. cerevisiae, respectively. Between the upstream homology and the prefix is the NatMX6 selection marker which confers resistance to nourseothricin in S. cerevisiae. To target a DNA part of interest to the His3 locus in S. cerevisiae, insert the DNA part within the prefix and the suffix using any method of your choice. Then, digest the plasmid using PmeI. This creates a DNA fragment comprised of the DNA part of interest flanked by the His3 locus upstream homology along with NatMX resistance and the downstream homology at the 5' and 3' ends of the part, respectively. Transform the digest into S. cerevisiae using a lithium acetate protocol of choice and plate on nourseothricin selection.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found at 3414
    Illegal suffix found at 3436
  • 12
    INCOMPATIBLE WITH RFC[12]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 3414
    Illegal SpeI site found at 3437
    Illegal PstI site found at 3451
    Illegal NotI site found at 3420
    Illegal NotI site found at 3444
  • 21
    INCOMPATIBLE WITH RFC[21]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 3414
    Illegal XhoI site found at 1026
    Illegal XhoI site found at 2052
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found at 3414
    Illegal suffix found at 3437
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found at 3414
    Plasmid lacks a suffix.
    Illegal XbaI site found at 3429
    Illegal SpeI site found at 3437
    Illegal PstI site found at 3451
    Illegal NgoMIV site found at 2945
    Illegal NgoMIV site found at 3034
    Illegal AgeI site found at 2663
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.


[edit]
Categories
//plasmidbackbone/assembly
Parameters
biologySaccharomyces cerevisiae
chassisSaccharomyces cerevisiae and Escherichia coli
device_typePlasmid backbone for homologous recombination in Saccharomyces cerevisiae