Plasmid_Backbone
Ade2::EXSP

Part:BBa_K3271000

Designed by: Setti Belhouari   Group: iGEM19_uOttawa   (2019-10-12)


Ade2::EXSP pSB1K3

The prefix and suffix (EXSP) of the pSB1K3 backbone are flanked by the upstream and downstream homology sequences of the Ade2 locus from S. cerevisiae, respectively. To target a DNA part of interest to the Ade2 locus in S. cerevisiae, insert the DNA part within the prefix and the suffix using any method of your choice. Then, digest the plasmid using PmeI. This creates a DNA fragment comprised of the DNA part of interest flanked by the Ade2 locus upstream homology and the downstream homology at the 5' and 3' ends of the part, respectively. Transform the digest into S. cerevisiae using a lithium acetate protocol of choice. Homologous recombination will facilitate the insertion of the DNA part of interest in the Ade2 locus.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found at 2276
    Illegal suffix found at 2298
  • 12
    INCOMPATIBLE WITH RFC[12]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 2276
    Illegal SpeI site found at 2299
    Illegal PstI site found at 2313
    Illegal NotI site found at 2282
    Illegal NotI site found at 2306
  • 21
    INCOMPATIBLE WITH RFC[21]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 2276
    Illegal XhoI site found at 1012
    Illegal XhoI site found at 2038
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found at 2276
    Illegal suffix found at 2299
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found at 2276
    Plasmid lacks a suffix.
    Illegal XbaI site found at 2291
    Illegal SpeI site found at 2299
    Illegal PstI site found at 2313
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.


[edit]
Categories
//plasmidbackbone/assembly
Parameters
biologySaccharomyces cerevisiae
chassisSaccharomyces cerevisiae and Escherichia coli
device_typePlasmid backbone for homologous recombination in Saccharomyces cerevisiae