Coding

Part:BBa_K957004

Designed by: Dylan Patrick Webster   Group: iGEM12_Cornell   (2012-09-25)


nah Operon for degradation of naphthalene to salicylate

One of two positively regulated operons of the NAH7 plasmid from Pseudomonas putida which encode the enzymes for metabolism of naphthalene via salicylate. When used with a BioBrick generator responsive to salicylate via the NahR activator (e.g. BBa_K957002 and BBa_K957003), this operon can function as part of a whole-cell biosensor for naphthalene.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1867
    Illegal PstI site found at 5862
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 4122
    Illegal PstI site found at 1867
    Illegal PstI site found at 5862
    Illegal NotI site found at 8165
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 5215
    Illegal BamHI site found at 3200
    Illegal BamHI site found at 5902
    Illegal XhoI site found at 1311
    Illegal XhoI site found at 3699
    Illegal XhoI site found at 3851
    Illegal XhoI site found at 9353
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1867
    Illegal PstI site found at 5862
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1867
    Illegal PstI site found at 5862
    Illegal NgoMIV site found at 1804
    Illegal NgoMIV site found at 3579
    Illegal NgoMIV site found at 5453
    Illegal NgoMIV site found at 6065
    Illegal NgoMIV site found at 9378
    Illegal AgeI site found at 642
    Illegal AgeI site found at 3573
    Illegal AgeI site found at 6281
    Illegal AgeI site found at 8276
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 2921
    Illegal BsaI site found at 3594
    Illegal BsaI site found at 4185
    Illegal BsaI site found at 5351
    Illegal BsaI.rc site found at 2755
    Illegal BsaI.rc site found at 5505
    Illegal BsaI.rc site found at 7790
    Illegal SapI.rc site found at 3285
    Illegal SapI.rc site found at 3831
    Illegal SapI.rc site found at 7682


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Categories
Parameters
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