Coding

Part:BBa_K916003

Designed by: Joseph Elsherbini   Group: iGEM12_Georgia_Tech   (2012-10-01)

Leucine Zipper NGFP translational fusion

Figure 1 Barnard E, McFerran NV, Trudgett A, Nelson J, Timson DJ. Development and implementation of split-GFP-based bimolecular fluorescence complementation (BiFC) assays in yeast. Biochem Soc Trans. 2008 Jun;36(Pt 3):479-82. PMID: 18481985.
http://www.ncbi.nlm.nih.gov/pubmed/18481985

This is a leucine zipper domain fused to the N terminal fragment of GFP used in GFP fragment implementation assays. This part has been sequenced and is fully characterized. Flow cytometry data showing it's ability to produce fluorescence can be found both below and [http://2012.igem.org/Team:Georgia_Tech on our wiki].

A paper showing the source of this part can be found in our references section

NOTE: This part has no promoter, and so can be used with any BioBrick promoter in the registry. See the list of promoters here.


Usage and Biology

This is for use with part BBa_K916004 as a [http://en.wikipedia.org/wiki/Bimolecular_fluorescence_complementation GFP-fragment complementation] based biosensor.

This part codes for a fusion protein of the N-terminal fragment of GFP (NGFP) and a [http://en.wikipedia.org/wiki/Leucine_zipper leucine zipper domain.] Leucine zipper domains form homodimers. When this protein is expressed in a cell also expressing the leucine zipper CGFP fusion (encoded in part BBa_K916004), the dimerization brings the GFP fragments into proximity and allows them to interact and fluoresce like an intact GFP peptide.

This is flow cytometry data showing a negative control with no induction of the GFP fragments, showing a population distribution in the range of no flourescence


This is flow cytometry data showing that, in a cell also expressing BBa_K916004, this part produces fluorescence population-wide


Fluorescent colonies were only observed on plates when both this part and BBa_K916004 were induced in the cells, as is the case on the bottom right plate.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 6
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 618
    Illegal XhoI site found at 521
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None