Coding
Part:BBa_K783083
Designed by: Traci Haddock Group: iGEM12_BostonU (2012-10-03)
mmoR from M. trichosporium OB3b MoClo format
mmoR is a sigma-54 regulatory activator amplified from Methylosinus trichosporium OB3b and positively regulates pMmoR (BBa_K783066). Copper represses that activity.
This has two MoClo fusion sites flanking the part: 5' C [part] D 3'
The fusion site letters refer to 4bp fusion sites: A = GGAG; B = TACT; C = AATG; D = AGGT; E = GCTT; F = CGCT; G = TGCC; H = ACTA.
Note: This gene has three PstI cut sites, so this cannot be built using standard BioBrick protocols.
Sequence and Features
Assembly Compatibility:
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 1130
Illegal PstI site found at 1406
Illegal PstI site found at 2039 - 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 1130
Illegal PstI site found at 1406
Illegal PstI site found at 2039 - 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 35
Illegal XhoI site found at 407
Illegal XhoI site found at 1883 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 1130
Illegal PstI site found at 1406
Illegal PstI site found at 2039 - 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 1130
Illegal PstI site found at 1406
Illegal PstI site found at 2039
Illegal NgoMIV site found at 80
Illegal NgoMIV site found at 262
Illegal NgoMIV site found at 508
Illegal NgoMIV site found at 776
Illegal NgoMIV site found at 860
Illegal NgoMIV site found at 1197 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 1103
[edit]
Categories
Parameters
//rnap/prokaryote/ecoli/sigma54
family | σ54 regulatory protein |
function | induces pMmoR (BBa_K783082) |
origin | Methylosinus trichosporium OB3b |