Coding
SSBP

Part:BBa_K4674003

Designed by: Chun Ying Yu   Group: iGEM23_CCU-Taiwan   (2023-10-08)


Single-strand binding protein (SSBP) ssDNA binding proteins: the EcSBP

Single-stranded DNA binding protein (SBP) sequester and protect the ssDNA. In E. Coli, the SBP (EcSBP; Genebank: QGY26441.1) is associated with the genome stability. The N-terminal of EcSBP is responsible for the ssDNA binding.

fig-3-design-okik.png

Fig. The structure of tetrameric SBPs from Shishmarev et. al. 2014

Experimental result

After cloning into the pET15b vector, We induced the RepA and SSBP protein expression by IPTG. After 6 hours of IPTG induction at 37°C, we found that the RepA and SSBP were expressed. However, the expression of protein was found in the inclusion body (cell pellet).

fig-8-result-okik-2.png

Fig. The coomassie blue staining of SDS-PAGE analysis of RepA and SSBP protein induction. S: supernatant; P: cell pellet.

References Shishmarev D, et al. (2014) Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein determined by nuclear magnetic resonance spectroscopy Nucleic Acids Res. 42(4):2750-7.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None