Protein_Domain
Ala Linker

Part:BBa_K4422008

Designed by: Grecia García-Elizalde   Group: iGEM22_UAM   (2022-09-30)


3XAla Linker

The use of a three-alanine linker has been reported in some research for the construction of fusion proteins between Snowdrop lectin (Galanthus nivalis agglutinin; GNA) and insecticidal peptides. Linkers or spacers are short amino acid sequences created in nature to separate multiple domains in a single protein. Each peptide is attached to the N-terminus of GNA with a three-alanine linker to allow maximum flexibility.

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Trung, N. P., Fitches, E., & Gatehouse, J. A. (2006). A fusion protein containing a lepidopteran-specific toxin from the South Indian red scorpion (Mesobuthus tamulus) and snowdrop lectin shows oral toxicity to target insects. BMC Biotechnology, 6, 1–12. https://doi.org/10.1186/1472-6750-6-18

Pyati, P., Fitches, E., & Gatehouse, J. A. (2014). Optimising expression of the recombinant fusion protein biopesticide ω-hexatoxin-Hv1a/GNA in Pichia pastoris: Sequence modifications and a simple method for the generation of multi-copy strains. Journal of Industrial Microbiology and Biotechnology, 41(8), 1237–1247. https://doi.org/10.1007/s10295-014-1466-8

Reddy Chichili, V. P., Kumar, V., & Sivaraman, J. (2013). Linkers in the structural biology of protein-protein interactions. Protein science : a publication of the Protein Society, 22(2), 153–167. https://doi.org/10.1002/pro.2206

Crasto, C. J., & Feng, J. A. (2000, May). LINKER: a program to generate linker sequences for fusion proteins. Protein Engineering, Design and Selection, 13(5), 309–312. https://doi.org/10.1093/protein/13.5.309


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None