Coding

Part:BBa_K4404006

Designed by: Julia Fricke   Group: iGEM22_Goettingen   (2022-10-09)


acsB, acsA and cooC2 from A. woodii with SfaA1 restriction site

This is a fragment with a length of 4.965 kb, which was amplified from the genomic DNA of Acetobacterium woodii. It consists of the genes ascB1, cooC2 and acsA. cooC2 and acsA are located immediately upstream of acsB1. acsB1 codes for the acetyl-CoA synthase subunit (ACS) of the CODH/ACS-complex which catalyzes the formation of acetyl-CoA from CO and [CH3]-Co-FeS-P. cooC2 codes for the putative CODH nickel-insertion accessory protein. acsA partially codes for the carbon monoxide dehydrogenase subunit of the CODH/ACS-complex, which catalyzes the reduction of CO2 to CO. All these genes are parts of the Wood-Ljungdahl pathway of acetogenic bacteria. The gene coding fragment is flanked by specific restriction sites and overhangs. Upstream it is flanked by a SfaA1 restriction site and a 5 base pairs overhang. Downstream it is flanked by a Nhe1 restriction site and a 5 base pairs overhang.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 692
    Illegal EcoRI site found at 4268
    Illegal EcoRI site found at 4613
    Illegal EcoRI site found at 4901
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 692
    Illegal EcoRI site found at 4268
    Illegal EcoRI site found at 4613
    Illegal EcoRI site found at 4901
    Illegal NheI site found at 4955
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 692
    Illegal EcoRI site found at 4268
    Illegal EcoRI site found at 4613
    Illegal EcoRI site found at 4901
    Illegal BamHI site found at 4939
    Illegal XhoI site found at 303
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 692
    Illegal EcoRI site found at 4268
    Illegal EcoRI site found at 4613
    Illegal EcoRI site found at 4901
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 692
    Illegal EcoRI site found at 4268
    Illegal EcoRI site found at 4613
    Illegal EcoRI site found at 4901
    Illegal AgeI site found at 2884
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 2137


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Categories
Parameters
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