Part:BBa_K4349005
PROMOTER + RBS + NSP4 + EXOCHI + HISTAG + TERMINATOR
UFMG_UFV_Brazil team designed this composite part to express and secrete exochitinase CfcI from Aspergillus niger in E. coli. The construct consists of a strong constitutive promoter, RBS, signal peptide NSP4, exochitinase CfcI, Histidine tag(6x) and terminator for E.coli. The composite part is shown below:
Usage and Biology
UFMG_UFV_Brazil synthesized this construction via IDT Grant, receiving it as linear double-strand DNA. We added 3' adenine overhangs with Taq polymerase and proceeded to TA cloning, inserting the construct in pCR™2.1-TOPO™ cloning vector from ThermoFisher (the vector comes with thymine overhangs). Then, we transformed DH5alpha E.coli with the resultant plasmid.
The bacteria grew and we performed Miniprep to obtain more quantity of the plasmid. After that, we performed two digestions (in the Miniprep and in the pSB1C3): first with EcoRI and then with PstI. We did the digestions and the ligation to insert our construct in the expression vector pSB1C3 from iGEM.
EcoRI digestion
The first digestion with EcoRI was confirmed in this 1% agarose gel electrophoresis. We expected to obtain a digested exochitinase construct with 1542bp. The gel has some stains because of RNA contamination.
PstI digestion
We extracted the digested exochitinase construct and the digested pSB1C3 from the EcoRI gel. We digested the resultant samples with PstI. Then, we precipitated the post-digestion DNA samples.
Ligation
After that, we ligated the backbone + the insert with the T4 DNA Ligase. We left the reaction in the Thermocycler 16°C overnight.
BL21 Transformation
After inserting BBa_K4349005 in the expression vector pSB1C3, we transformed BL21 E.coli. After they grew, we did another Miniprep.
NotI digestion
We checked if the insertion in pSB1C3 was successful by digesting the resultant Miniprep with NotI. The restriction sites for NotI are present in the Biobrick prefix and suffix. We observed the expected bands in the 1% gel electrophoresis: 1517 bp.
We also proved that the insertion was successful by doing PCR with the primers VF2 and VR.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 619
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 89
- 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 206
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