Coding

Part:BBa_K4189010

Designed by: Fanny Bonil   Group: iGEM22_Aix-Marseille   (2022-10-09)

_NOTOC__ PP3

Introduction

As we all know, plastic is not biodegradable. Indeed, it’s created from fossils such as crude oil and heated to create strong polymers that cannot be found in nature which results in micro-organisms who didn't evolve to attack these strong and high energy demanding bonds. That is why we tried to find and modify adherence proteins that will bind our degradation system to the chosen plastics.

Usage and Biology

  • it's one peptide that is normally capable to bind a PP plastic

Sequence and Features

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Characterization

The promoter was characterized using GFP to measure gene expression at different concentrations and on various plastics to check its affinity and specificity. To do so, we inoculated E. Coli BL21 strain with pET GFP in LB-medium, and after inoculation, we induced and purified it in an Econocolumn Biorad.

The GFP was used as a tracker to be able to, during our adhesion tests to quantify the protein that adhered to the plastic by using a fluorometer.

Adherence tests

We couldn't make any tests on that one, since we didn't succeed in producing it.


Results

Fluorometer result for PP3 :

Elution (PP) Droplet (PP) Elution (PE) Droplet (PE) Replica (PP)
Result X X X X X
SDS alone C1 3441 C1 3408 C1 3902 C1. 2816 C1. 2000
GFP alone C1. 4428 C2. 2640 C1. 27549 C2. 523 C1. 11 800 C2. 4288 C1. 1130 C2. 317 C1. 3998 C2. 3997



[edit]
Categories
//proteindomain
Parameters
None