Part:BBa_K3477001

Gene coding for his-tagged BphB enzyme including BBa_0034 RBS, Bba_J23106 promoter and Bba_0010 term

This part constitutes the translational unit of Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (BphB). Upstream of the coding region there is the biobrick prefix, the BBa_J23106 constitutive promoter (from the Anderson family) and the BBa_B0034 ribosome binding site (RBS). The gene sequence comes from Uniprot.org and is codon optimized for Escherichia coli. The sequence is followed by a 6x his-tag sequence. Downstream of the coding region there is the BBa_B0010 terminator and the biobrick suffix.

The enzyme coded for, BphB, origiates from Pseudomonas sp. KKS102 and takes part in the second step of the Biphenyl degradation pathway. The Biphenyl degradation pathway degrades biphenyl molecules to benzoate and 2-oxopent-4-enolate. The included his-tag allows for purification of the expressed protein using a his-tag purification kit.

Sequence and Features

Assembly Compatibility:

• 10
  INCOMPATIBLE WITH RFC[10]

  Illegal suffix found in sequence at 1007
  Illegal EcoRI site found at 1
  Illegal XbaI site found at 56
  
• 12
  INCOMPATIBLE WITH RFC[12]

  Illegal EcoRI site found at 1
  Illegal NheI site found at 27
  Illegal NheI site found at 50
  Illegal SpeI site found at 1008
  Illegal PstI site found at 1022
  Illegal NotI site found at 7
  Illegal NotI site found at 1015
  
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal EcoRI site found at 1
  
• 23
  INCOMPATIBLE WITH RFC[23]

  Illegal suffix found in sequence at 1008
  Illegal EcoRI site found at 1
  Illegal XbaI site found at 56
  
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal prefix found in sequence at 1
  Illegal XbaI site found at 56
  Illegal SpeI site found at 1008
  Illegal PstI site found at 1022
  Illegal NgoMIV site found at 461
  Illegal AgeI site found at 111
  
• 1000
  COMPATIBLE WITH RFC[1000]