Coding

Part:BBa_K2088003

Designed by: Xia Chen   Group: iGEM16_NAU-CHINA   (2016-10-07)


pbaA1A2

PbaA1A2 protein coding region. This part encodes an oxygenase, which is one of three components of the 3-phenoxybenzoate 1',2'-dioxygenase.

3-phenoxybenzoate 1',2'-dioxygenase is an angular dioxygenase. It belongs to a type IV Rieske non-heme iron aromatic ring-hydroxylating oxygenase (RHO) system consisting of a hetero-oligomeric oxygenase, a [2Fe-2S]-type ferredoxin, and a GR-type reductase. In our project, 3-phenoxybenzoate 1',2'-dioxygenase catalyzes the hydroxylation in the 1'and 2' positions of the benzene moiety of 3-phenoxybenzoate(3-PBA), yielding 3-hydroxybenzoate(3-HBA) and catechol. PbaA1A2 is the terminal oxidase during the angular dioxygenation of 3-PBA.

pbaA1 encodes a putative 48-kDa protein consisting of 435 amino acids, pbaA2 encodes a putative 21-kDa protein consisting of 176 amino acids. They encodes phenoxybenzoic acid dioxygenase alpha subunit and beta subunit respectively.

PbaA1 contains conserved sequences for a Rieske [2Fe-2S] domain (CXHX17CX2H) and a nonheme Fe(II) domain (EX4DX2HX4H), suggesting that PbaA1 is the oxygenase component of an RHO.

Note that this part should always be used with:

  • pbaB :a [2Fe-2S]-type ferredoxin. For more details, see BBa_K2088007.
  • pbaC:a glutathione reductase (GR)-type reductase to physiologically transfer electrons to PbaA1A2B. For more details ,see BBa_K2088005.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 215
    Illegal NgoMIV site found at 822
    Illegal NgoMIV site found at 846
    Illegal AgeI site found at 730
  • 1000
    COMPATIBLE WITH RFC[1000]


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Parameters
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