Coding

Part:BBa_K1965046

Designed by: Katja Leben   Group: iGEM16_Slovenia   (2016-10-17)


Myc:B:nLuc

This construct consists of the N-terminal part of the split luciferase attached to the coiled coil B. The sequence for the coiled coil B was taken from the Shekhawat et al. (1). The construct also features a Myc protein tag on the N-terminus. Coiled coil B dimerizes with the coiled coil A, which was also described in Shekhawat et al.. If the A coil is fused to the C-terminal part of the split luciferase (BBa_K1965045), the luciferase can reassemble and regain its activity through the dimerization of the coiled coil pair A and B (2A) [1] .

Sequence alignment of different coiled coils used to tune the affinity of antiparallel coiled-coils.
We designed different destabilized coils from our coiled coil pair AP4 and P3; Ile and Leu were substituted with Ala at the a and/or d position of the first and/or second heptad of P3mS (a more soluble variant of the original P3).
Interactions and protease activated AB coiled-coil formation.
HEK293T cells were transfected with plasmids, coding for the appropriate coiled coil constructs. 24 h after transfection cells were lysed and luciferase activity was determined with the dual luciferase assay. (A) A and B coiled-coils, fused the split firefly luciferase spontaneously interact and reconstitute firefly luciferase. (B) A’:TEVs:B:nLuc and cLuc:A:PPVs:B’2A auto-inhibitory coiled coils reconstitute activity of firefly luciferase upon cleavage by TEV and PPV proteases. Successive luciferase reconstitution is observed only at high amounts of plasmids coding for the A’:TEVs:B:nLuc and cLuc:A:PPVs:B’2A constructs.
[1] Shekhawat, S. S., Porter, J. R., Sriprasad, A., & Ghosh, I. (2009). An Autoinhibited Coiled-Coil Design Strategy for Split-Protein Protease Sensors. Jacs, 131(42), 15284–15290.



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 229
    Illegal NgoMIV site found at 1573
    Illegal NgoMIV site found at 1594
    Illegal AgeI site found at 1297
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 1479


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Categories
Parameters
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