Part:BBa_K176026
TetR repressible AHL->GFP Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->GFP
AHL -> GFP
TetR repressible
Very high LuxR level
K176028 with GFP.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 985
Illegal BsaI.rc site found at 1729
MEASUREMENT
=measurement1
We mesured the hybrid promoter's response to AHL concentration through different devices. INPUT: AHL DEVICE: TetR repressible AHL->GFP Receiver: K176026 ( pCon 0.70->luxR+pLux/Tet->GFP ); K176126 ( pCon 0.36->luxR+pLux/Tet->GFP ); K176128 ( pCon 0.15->luxR+pLux/Tet->GFP ); K176130 ( pCon 0.04->luxR+pLux/Tet->GFP ); OUTPUT: GFP
Model
To see the details of the model, click [http://2009.igem.org/Team:USTC/Modeling/Model-2 here] please.
data
K176026 |
T(hour) | OD600 | FLU(arbitrary) | FLU/OD(arbitrary) | AHL(M) | ST.FLU/OD(ustc_st1) |
0.5 | 0.152 | 0.513666667 | 3.379385965 | 0 | 13.50835818 |
0.5 | 0.164 | 0.547333333 | 3.337398374 | 1.00E-10 | 13.34052194 |
0.5 | 0.177 | 0.550666667 | 3.111111111 | 1.00E-09 | 12.43598797 |
0.5 | 0.146 | 0.442333333 | 3.029680365 | 1.00E-08 | 12.11048633 |
0.5 | 0.166 | 0.563666667 | 3.395582329 | 1.00E-07 | 13.57309961 |
0.5 | 0.167333333 | 0.541333333 | 3.235059761 | 1.00E-05 | 12.93144566 |
1.5 | 0.247333333 | 0.810666667 | 3.277628032 | 0 | 13.10160304 |
1.5 | 0.252 | 1.463 | 5.805555556 | 1.00E-10 | 23.20644184 |
1.5 | 0.254 | 15.52866667 | 61.13648294 | 1.00E-09 | 244.3797535 |
1.5 | 0.245 | 34.521 | 140.9020408 | 1.00E-08 | 563.2251701 |
1.5 | 0.261 | 35.881 | 137.4750958 | 1.00E-07 | 549.526705 |
1.5 | 0.254 | 39.50733333 | 155.5406824 | 1.00E-05 | 621.7399465 |
2.5 | 0.372 | 1.536666667 | 4.130824373 | 0 | 16.51206928 |
2.5 | 0.405333333 | 3.574666667 | 8.819078947 | 1.00E-10 | 35.2523442 |
2.5 | 0.411666667 | 68.232 | 165.745749 | 1.00E-09 | 662.5324739 |
2.5 | 0.403 | 177.9833333 | 441.6459884 | 1.00E-08 | 1765.383493 |
2.5 | 0.383666667 | 187.4133333 | 488.479583 | 1.00E-07 | 1952.59057 |
2.5 | 0.404 | 192.4866667 | 476.4521452 | 1.00E-05 | 1904.513512 |
3.5 | 0.722 | 3.111666667 | 4.309787627 | 0 | 17.22743585 |
3.5 | 0.873333333 | 8.359333333 | 9.571755725 | 1.00E-10 | 38.26100542 |
3.5 | 0.781 | 175.7666667 | 225.0533504 | 1.00E-09 | 899.6016725 |
3.5 | 0.734333333 | 373.0766667 | 508.0481162 | 1.00E-08 | 2030.811513 |
3.5 | 0.674333333 | 396.2633333 | 587.6371725 | 1.00E-07 | 2348.951403 |
3.5 | 0.72 | 400.7966667 | 556.662037 | 1.00E-05 | 2225.135056 |
For the details of the definition of ST.FLU and the unit ustc_st1, please click here.
plot
protocol
AHLHybrid promoter:BBa_K176026, BBa_K176126, BBa_K176128, BBa_K176130
1. Streak a plate of the strain which contain one of the parts listed in pSB1A3 .
2. Inoculate two 3ml cultures of supplemented M9 Medium and antibiotic(Ampicillin 0.1mg/ml) with single colony from the plate.
3. Cultures were grown in test tubes(BIO BASIC INC.12ml Polypropylene Round-bottom Culture Tubes With Graduations And Dual Cap Cat.No:TD444) for 16hrs at 37℃ with shaking at 200rpm.
4. Cultures were diluted 1:1000 to tubes of 3ml fresh medium and grown for 4.5hrs.
5. Stock concentration of the cognate AHL, 3-oxohexanoyl-homoserine is diluted and added to different tubes to yield different final concentrations (1E-5,1E-7,1E-8,1E-9,1E-10M).To ensure the same response time , the AHL should be added with a time interval of 2mins between tubes, so do the measurements procedure.
6. Measure the fluorescence(SHIMDZU SPECTROFLUOROPHOTOMETER RF-5301PC, 250ul quartz cell path length 10mm,501 nm excitation,514 nm emission,1.5nm slit width) and absorbance ((HITACHI UV-VIS spectrophotometer U-2810 ,200ul quartz cell path length 10mm,600nm,1.5 nm slit width) for the first time 30 minutes after adding AHL. Repeat measurement every 30 mins in the next 4hrs.
Measurement2
- K176026([[1]]) is a device which can response to different concentrations of AHL. Here, we use K176126 as a detector to examing the AHL concentrations produced by constitutive promoters + luxI.
constitutive promoters + luxI-LVA: K176020( J23101->luxI-LVA); K176021( J23107->luxI-LVA); K176022( J23115->luxI-LVA); K176023( J23109->luxI-LVA); K176024( J23103->luxI-LVA);
measuring device: K176217:( K176020 + K176026):( K176083 + GFP); K176218:( K176021 + K176026):( K176084 + GFP); K176219:( K176022 + K176026):( K176085 + GFP); K176220:( K176023 + K176026):( K176086 + GFP); K176221:( K176024 + K176026):( K176087 + GFP);
data
K176217 |
T(min) | OD600 | FLU(arbitrary) | FLU/OD600(arbitrary) | ST.FLU/OD600(ustc_st1) | ST.FLU(ustc_st1) |
0 | 0.0875 | 100.2605 | 1147.557098 | 4587.109158 | 401.3720513 |
60 | 0.120666667 | 148.52 | 1229.380903 | 4914.181969 | 592.9779576 |
120 | 0.145 | 198.92 | 1370.07619 | 5476.580687 | 794.1041996 |
180 | 0.207666667 | 292.4516667 | 1404.89787 | 5615.772756 | 1166.208809 |
K176218 |
T(min) | OD600 | FLU(arbitrary) | FLU/OD600(arbitrary) | ST.FLU/OD600(ustc_st1) | ST.FLU(ustc_st1) |
0 | 0.1035 | 75.11366667 | 721.4097924 | 2883.678268 | 298.4607008 |
60 | 0.150333333 | 123.0506667 | 808.6659075 | 3232.465553 | 485.9473215 |
120 | 0.1995 | 195.035 | 966.403576 | 3862.987472 | 770.6660008 |
180 | 0.308333333 | 351.1483333 | 1131.802978 | 4524.135501 | 1394.941779 |
K176219 |
T(min) | OD600 | FLU(arbitrary) | FLU/OD600(arbitrary) | ST.FLU/OD600(ustc_st1) | ST.FLU(ustc_st1) |
0 | 0.2515 | 32.2705 | 125.5594805 | 501.8966322 | 126.227003 |
60 | 0.372833333 | 43.24566667 | 112.4353648 | 449.4358429 | 167.5646634 |
120 | 0.474833333 | 68.484 | 139.8281768 | 558.9326329 | 265.3998452 |
180 | 0.594833333 | 116.7865 | 192.791143 | 770.6405364 | 458.4026791 |
K176220 |
T(min) | OD600 | FLU(arbitrary) | FLU/OD600(arbitrary) | ST.FLU/OD600(ustc_st1) | ST.FLU(ustc_st1) |
0 | 0.2485 | 7.723 | 32.1438897 | 128.4881869 | 31.92931443 |
60 | 0.4105 | 12.202 | 29.72814969 | 118.8317932 | 48.78045109 |
120 | 0.491666667 | 17.4355 | 36.20398381 | 144.7175273 | 71.15278427 |
180 | 0.611 | 31.26466667 | 51.84736322 | 207.2485239 | 126.6288481 |
K176221 |
T(min) | OD600 | FLU(arbitrary) | FLU/OD600(arbitrary) | ST.FLU/OD600(ustc_st1) | ST.FLU(ustc_st1) |
0 | 0.219666667 | 11.49566667 | 52.33304675 | 209.1899378 | 45.95205634 |
60 | 0.3495 | 16.41366667 | 46.97848701 | 187.7862534 | 65.63129556 |
120 | 0.454833333 | 24.69433333 | 54.29412657 | 217.0289266 | 98.71199013 |
180 | 0.5765 | 43.4475 | 75.41615552 | 301.4596295 | 173.7914764 |
For the details of the definition of ST.FLU and the unit ustc_st1, please click here.
plot
protocol
1. Streak a plate of the strain which contain one of the parts listed in pSB1A3 .
2. Inoculate two 3ml cultures of supplemented M9 Medium and antibiotic( Ampicillin 0.1mg/ml) with single colony from the plate.
3. Cultures were grown in test tubes(BIO BASIC INC.12ml Polypropylene Round-bottom Culture Tubes With Graduations And Dual Cap Cat.No:TD444) for 16hrs at 37℃ with shaking at 200rpm.
4. Cultures were diluted 1:100 into 3ml fresh medium and grown for 3hrs.
5. Measure the fluorescence(SHIMDZU SPECTROFLUOROPHOTOMETER RF-5301PC, 250ul quartz cell path length 10mm,501 nm excitation,514 nm emission,1.5nm slit width) and absorbance (HITACHI UV-VIS spectrophotometer U-2810 ,200ul quartz cell,path length 10mm,600nm,1.5 nm slit width) every 30 minutes in the next 4hrs.
n/a | TetR repressible AHL->GFP Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->GFP |