Plasmid

Part:BBa_K1297000

Designed by: Kyoungwoo Jang   Group: iGEM14_CSIA-SouthKorea   (2014-06-05)


Klebsiella oxytoca Urease

This part is complex of pSB1C3 vector and urease gene from Klebsiella oxytoca KCTC 1686.

Our main purpose is prevention of desertification by biocementation, and we used this enzyme for biocementation. A function of urease is catalyzing the hydrolysis of urea to release ammonia and carbon dioxide. The released carbon dioxide dissolves in water, and is precipitated with Ca2+, forming CaCO3 (biocement).

In our study, we cloned this enzyme with pBAD vector by ligation independent cloning (LIC) for enzyme overexpression, and observed the catalytic activity of it in Escherichia coli by pH indicator assay. To verify microbial biocementation, we performed a biocementation test with synthetic E. coli and detected the whole-cell activity by measuring the radius of precipitated biocement.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 225
    Illegal XhoI site found at 337
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 452
    Illegal NgoMIV site found at 673
    Illegal NgoMIV site found at 1339
    Illegal NgoMIV site found at 1754
    Illegal NgoMIV site found at 1841
    Illegal NgoMIV site found at 2788
    Illegal NgoMIV site found at 3578
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1900
    Illegal BsaI.rc site found at 148
    Illegal BsaI.rc site found at 3197
    Illegal SapI.rc site found at 3938


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