RBS

Part:BBa_K879022

Designed by: Nien-Tsu Tseng   Group: iGEM12_Alberta   (2012-09-29)

Rbs 2


The Salis RBS calculator was used to design this ribosome binding site (https://salis.psu.edu/software/). It is one of several RBS sequences of similar strength that were each tailored to a particular ORF, in this case the blue chromoprotein amilCP (BBa_K879012), and showed significant sequence variation between each other to minimize the chances of intra-molecular recombination when used in combination. The RBS was calculated for each protein coding sequence with a target translation initiation strength set to a value of 50,000 for each of the ORFs used by the 2012 University of Alberta iGEM Team using a common length constraint that began with the common transcriptional start site. For this particular RBS, strong blue expression was observed.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None