Translational_Unit

Part:BBa_K772001

Designed by: Mustafa Elitok   Group: iGEM12_Fatih-Medical   (2012-09-24)

EpCAM Binding Dock: C-terminus

This gene sequence includes an EpCAM (Epithelial Cell Adhesion Molecule) antigen binding domain, OmpA transmembrane protein (dock) and TEV protease C terminus. It is planned to use this subpart with BBa_772, which contains only TEV protease N terminus differently instead of C terminus, in order to induce a signal reaction in the case of EpCAM presence. EpCAM is an natural antigen which is found high significantly in the cases of some breast and colorectal cancer subtypes. On the upstream region of protein sequence, there are a constitutive pLac promoter and appropiate RBS.

To see how this part works: [1]


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 13
    Illegal NheI site found at 36
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 441


[edit]
Categories
//cds/enzyme/protease
//cds/membrane/receptor
//cds/receptor/antibody
//chassis/prokaryote/ecoli
//function/cellsignalling
//proteindomain/binding
//proteindomain/cleavage
Parameters
chassisE.coli TOP10 strain
device_typeReceptor/Signal Activator
functionDetection/Signalling
ligandsEpCAM antigen
proteinsTEVp C term., OmpA, CD215 antibody
targetEpCAM antigen