Coding

Part:BBa_K5101007:Design

Designed by: Ziqi Mi   Group: iGEM24_ZQT-Nanjing   (2024-09-23)
Revision as of 19:49, 1 October 2024 by Casey (Talk | contribs) (References)

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Certolizumab (Anti-TNF-α )Heavy Chain With OmpA


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 603
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 603
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 603
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 603
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 603
    Illegal AgeI site found at 585
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The genes encoding these antibody fragments were synthesized based on sequences adapted for bacterial expression and optimized for E. coli, including an ompA signal sequence to direct the proteins to the periplasm. This localization is critical for proper protein folding and disulfide bond formation, essential for the functionality of the antibody. Certolizumab Pegol, used as the model for these fragments, is known for its efficacy in neutralizing TNF-α without Fc-mediated functions, which can be advantageous in reducing immunogenicity. For validation and scientific comparison, similar sequences used in this design are accessible in the NCBI database, which provides extensive data on various therapeutic antibodies.


Source

The genes encoding these antibody fragments were synthesized based on sequences adapted for bacterial expression and optimized for E. coli, including an ompA signal sequence to direct the proteins to the periplasm. This localization is critical for proper protein folding and disulfide bond formation, essential for the functionality of the antibody. Certolizumab Pegol, used as the model for these fragments, is known for its efficacy in neutralizing TNF-α without Fc-mediated functions, which can be advantageous in reducing immunogenicity. For validation and scientific comparison, similar sequences used in this design are accessible in the NCBI database, which provides extensive data on various therapeutic antibodies.

References

1. Wang Xiangfeng, Li Yueyang, Guo Liangyu, et al. Research progress on certolizumab in the treatment of moderate to severe plaque psoriasis [J]. Practical Drugs and Clinical, 2019, 22(08): 886-890.

2. Chen Yating, Wang Qiaomin. Research progress on anti-tumor necrosis factor-α monoclonal antibodies for the treatment of Crohn's disease [J]. International Journal of Digestive Diseases, 2014, 34(04): 227-229+240.

3. Duan Zexing, Luo Junqing, Li Weiqiang. Study on the efficacy of infliximab combined with azathioprine in the treatment of moderate to severe Crohn's disease [J]. Gastroenterology, 2013, 18: 229-232.

4. Talaei A, Mazaheri S, Bayat E, et al. Production of Soluble and Functional Anti-TNF-α Fab' Fragment in Cytoplasm of E. coli: Investigating the Effect of Process Conditions on Cellular Biomass and Protein Yield Using Response Surface Methodology[J]. The Protein Journal. 2021, 40(5): 786-798.