Plasmid

Part:BBa_K5143025

Designed by: Perrel Aymeric   Group: iGEM24_UnivLyon1-INSALyon   (2024-09-18)
Revision as of 17:03, 21 September 2024 by Aymericperrel (Talk | contribs)


Plasmid D

Description

This part was designed to be used in Saccharomyces cerevisiae . Its main components are fwYellow (BBa_K5143023) and Cp19k-MaSp1 (BBa_K5143022) fused together (BBa_K5143024).
By digesting this part with XhoI restriction enzyme, the linearized fragment could be transformed into the yeast in order to recombinate with the Ura locus in S. cerevisiae BY4741 strain. Then, the yeast will express the alphafactor-fwYellow-CBD-P2A-alphafactor-MaSp1-CBD gene. P2A (BBa_K5143012) system enables the ribosomal-switch on the mRNA, and leads to the formation of two different proteins : alphafactor-fwYellow-CBD and alphafactor-Cp19k_MaSp1-CBD.
In our project, these two proteins will be secreted by the yeast and will bind to the cellulose (thanks to the fused CBD) in order to functionalize the cellulose.

Cp19k-MaSp1
Figure 1: Cellulose functionalization process

Construction

The codons were optimised for synthesis and expression in Saccharomyces cerevisiae .
MaSp1 and Cp19k are fused with the GS linker: GGGGGTGGTGGTTTGGAAAGTGGAGGAGGTGGAAGT
This composite part is part of the following larger composite part: BBa_K5143024
It was synthesized in its entirety and then cloned via PCR into the following plasmid: BBa_K5143005

References

Ye L, Liu X, Li K, Li X, Zhu J, Yang S, Xu L, Yang M, Yan Y, Yan J. A bioinspired synthetic fused protein adhesive from barnacle cement and spider dragline for potential biomedical materials. Int J Biol Macromol. 2023 Dec 31;253(Pt 5):127125. doi: 10.1016/j.ijbiomac.2023.127125. Epub 2023 Sep 28. PMID: 37776922.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal suffix found in sequence at 3567
    Illegal EcoRI site found at 1361
    Illegal EcoRI site found at 7006
    Illegal EcoRI site found at 7533
    Illegal PstI site found at 2789
    Illegal PstI site found at 3092
    Illegal PstI site found at 3185
    Illegal PstI site found at 3191
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 1361
    Illegal EcoRI site found at 7006
    Illegal EcoRI site found at 7533
    Illegal SpeI site found at 3568
    Illegal PstI site found at 2789
    Illegal PstI site found at 3092
    Illegal PstI site found at 3185
    Illegal PstI site found at 3191
    Illegal PstI site found at 3582
    Illegal NotI site found at 3575
    Illegal NotI site found at 7539
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1361
    Illegal EcoRI site found at 7006
    Illegal EcoRI site found at 7533
    Illegal BamHI site found at 1906
    Illegal BamHI site found at 2620
    Illegal XhoI site found at 5171
    Illegal XhoI site found at 7012
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal suffix found in sequence at 3568
    Illegal EcoRI site found at 1361
    Illegal EcoRI site found at 7006
    Illegal EcoRI site found at 7533
    Illegal PstI site found at 2789
    Illegal PstI site found at 3092
    Illegal PstI site found at 3185
    Illegal PstI site found at 3191
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 7533
    Illegal EcoRI site found at 1361
    Illegal EcoRI site found at 7006
    Illegal SpeI site found at 3568
    Illegal PstI site found at 2789
    Illegal PstI site found at 3092
    Illegal PstI site found at 3185
    Illegal PstI site found at 3191
    Illegal PstI site found at 3582
    Illegal NgoMIV site found at 1876
    Illegal AgeI site found at 1915
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 4280


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