DNA

Part:BBa_K4765126

Designed by: Siliang Zhan   Group: iGEM23_Fudan   (2023-10-02)
Revision as of 10:06, 12 October 2023 by Siliang Zhan (Talk | contribs) (Desiccation Survival Assay)


ribozyme connected: H. ex mtSSB + SAHS 33020 + AnAFP contributed by Fudan iGEM 2023


Introduction

This composite part combines BBa_K4765016(H. ex mtSSB),BBa_K2306003(SAHS 33020)and BBa_K4765015(AnAFP) in our ribozyme-assisted polycistronic co-expression system:pRAP.

AnAFP is an antifreeze protein which endows E. coli with antifreeze capibility. SAHS 33020 is a heat soluble protein found in the tardigrades which increase E. coli 's stability against desiccation. H. ex mtSSB is a type of mitochondrial single-stranded DNA binding protein which improves E. coli 's resistance to desiccation and UV radiation.

Characterization

Agarose gel electrophoresis

contributed by Fudan iGEM 2023
Figure 1. Agarose gel electrophoresis of PCR products, amplified from bacterial colonies/cultures.

From left lane(1) to right lane(3) indicate the successful construction of H. ex mtSSB, H. ex mtSSB + SAHS 33020, and H. ex mtSSB + SAHS 33020 + AnAFP.

Desiccation Survival Assay

We constructed H. ex mtSSB, SAHS 33020, and AnAFP into this part using pRAP. Within BBa_K4765127, we rearranged the positions of these three proteins.

contributed by Fudan iGEM 2023
Figure 2. Workflow of Desiccation Survival Assay

We've designed an experimental group with E. coli expressing H. ex mtSSB , SAHS 33020 and AnAFP, and used E. coli transformed with the empty pET28a vector as a control. All proteins are expressed via leakage in E. coli BL21 DE3. All the groups are incubated overnight. After reaching an OD600 value of 1.0, liquid culture is centrifuged, and the supernatant is removed. Pellets are dried for 6.5 hr in SpeedVac (Savant SpeedVac SC100) under 4 0 °C .Finally, the pellets are weighed and resuspended in LB medium and dilute 10^5-fold for CFU counting.

Through experiments, we observed that when both H. ex mtSSB and SAHS 33020 are co-expressed, E. coli exhibits a higher survival rate under desiccation compared to E. coli expressing these two proteins individually. Furthermore, altering the order of these three proteins in pRAP does not affect the survival rate of E. coli, indicating that pRAP can correctly express these proteins, regardless of their position.

contributed by Fudan iGEM 2023
Figure 3. The dry weight of all the gourps after drying

There is no statistically significant difference in the dry weights among the experimental groups, indicating that the number of E. coli is consistent between the bacterial tubes.

contributed by Fudan iGEM 2023
Figure 4. CFU colony count of all the groups after drying

The E. coli expressing H.ex mtSSB, SAHS 33020 and AnAFP together showed higher CFU counts after drying compared to E.coli expresssing H. ex mtSSB and SAHS33020 individually. Futhermore there's no significant difference between the two E. colis with rearranged CDS positions. Mean values from three rounds of indepdent experiments are shown. Huge error bars suggest variations between rounds of experiments.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 247
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 880
    Illegal BsaI.rc site found at 515
    Illegal BsaI.rc site found at 596
    Illegal SapI site found at 409
    Illegal SapI.rc site found at 1804


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Categories
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Parameters
proteins