Composite

Part:BBa_K4885004

Designed by: Leyu Xu   Group: iGEM23_Nanjing-SDG   (2023-09-10)
Revision as of 02:57, 12 October 2023 by Xuleyu (Talk | contribs) ((1)Plasmid construction and transformation)


Pthl-adhE2-Pcat1-Cat1

This part is responsible for the expression of adhE2 gene with Pthl promotor and Cat1 gene with Pcatl promotor. adhE2 gene is derived from Clostridium acetobutylicum. Cat1 gene is derived from Clostridium tyrobutyricum (C. tyrobutyricum) L319. It consists of Pthl sequence (BBa_K3443002), strong ribosomal binding site (RBS) sequence (BBa_K103015), adhE2 sequence (BBa_K1462060), terminator sequence (BBa_K3585002), Pcat1 sequence (BBa_K4119011), strong ribosomal binding site (RBS) sequence (BBa_K103015), Cat1 gene sequence (BBa_K4119031) and terminator sequence (BBa_K3585002). adhE2 gene encodes for the alcohol/aldehyde bifunctional dehydrogenase. Its role is to convert acyl-CoA to aldehyde then to alcohol in two reductive steps using NADH as cofactor. Cat1 gene codes the butyryl-CoA/acetate CoA transferase.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Results

(1)Plasmid construction and transformation

We constructed pMTL-Pthl-adhE2-Pcat1-cat1 recombinant plasmid to inhibit the synthesis of a by-product, acetic acid, so that the synthesis of butanol and butyrate was enhanced indirectly. Using the recombinant plasmid Pthl-adhE2 constructed by BBa_K4408008 in the database as template and Vad-f and Vad-r as primers, the Vpthl-adhE2 vector (7985 bp) was amplified. Using C. tyrobutyricum genome as template and Cat-f and Cat-r as primers, cat1 gene fragment (1378 bp) was amplified.And Pcat-f and Pcat-r primers were used to amplify Pcat1 fragment. Gibson assembly method was used to link the cat1 gene fragment and Pcat1 fragmentto the Vpthl-adhE2 linearized vector. Colony PCR (1333 bp) was performed on the transformed colonies with primers cat-PF and Pb-PR. The positive colonies were transferred and plasmid was extracted. After gene sequencing verification, the recombinant plasmid pMTL-Pthl-adhE2-Pcat1-cat1 was obtained.

(2)Construction of C. tyrobutyricum L319 with pMTL-Pthl-adhE2-Pcat1-cat1

Ct(adhE2::cat1) strain was obtained by conjugation of recombinant plasmid pMTL-Pthl-adhE2-Pcat1-cat1 using E. coli CA434 as a donor strain and C. tyrobutyricum as a recipient strain. C. tyrobutyricum L319 transfected with pMTL-Pthl-adhE2 plasmid was notated as Ct(adhE2). Ct(adhE2) was used as the control. SDS-PAGE confirmed the overexpression of cat1 protein (47 kDa) in Ct(adhE2::cat1) (Figure1). HPLC showed that after fermentation for 215 hours, compared with Ct(adhE2), overexpressing cat1 in C. tyrobutyricum improved the yield of butyrate by 130%, and decreased the yield of butanol by 26% (Figure 2), increasing the butyrate-to-butanol molar ratio from 0.3 to 1.1. The increased product ratio was more favorable for the esterification of butyrate and butanol into butyl butyrate. In addition, the yield of acetate as a byproduct decreased significantly from 4 g/L to 1.2 g/L by overexpressing cat1.

Figure 1 Verification of cat1 protein overexpression in Ct(adhE2::cat1) by SDS-PAGE

Figure 2 Fermentation performance of butyrate, butanol and acetate of Ct(adhE2::cat1)


[edit]
Categories
Parameters
None