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Part:BBa_K258006:Experience

Designed by: Jung Hoon Ahn from Korea Advanced Institute of Science and Technology   Group: iGEM09_METU-Gene   (2009-10-09)
Revision as of 12:30, 17 October 2009 by Metugen (Talk | contribs) (Experiment)

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Experiment

Tributyrin : It is a triglyceride naturally present in butter. It is an ester composed of butyric acid and glycerol.


Chemical Formula: C15-H26-O6
Molecular Weight: 302.37 g/mole

Lipase : It is a soluble enzyme that catalyzes the hydrolysis of ester bonds in water–insoluble, lipid substrates.

ATP binding cassette (ABC) transporter secretes the protein through inner and outer membranes simultaneously in gram negative bacteria. Thermostable lipase (TliA) is secreted through the ABC transporter. TliA has four glycine rich repeats (GGXGXD) in its C-terminus, which appear in many ABC transporter-secreted proteins. Whole TliA is the longest LARD. Lipase ABC transporter domains (LARDs) were designed for the secretion of fusion proteins. Result of our experiment There was TliA-AbC in the LB Agar+Chm+Amp+Try plate so lipase reacted with tributyrin and butyric acid was formed. As a result of this, we have seen the zone formation.


w6
===Applications of BBa_K258006=== While the secretory phenotype of fusion proteins with TliA was evident based on lipase activity, secretion of fusion proteins with LARDs could be detected by Western blotting. '''Lipase activity''' To identify a secretion phenotype on solid medium, E. coli was grown at 25°C for 48 h on LAT (LB medium, 1.5% Bacto Agar, 0.5% tributylin). The phenotype was evident by the development of a halo due to the secreted lipase [12]. In addition, lipase activity was measured spectrophotometrically using p-nitrophenyl palmitate (pNPP) as a substrate [12]. Ten millimolar pNPP dissolved in acetonitrile was mixed with ethanol and 50 mM Tris-HCl (pH 8.5) to a final ratio of acetonitrile:ethanol:Tris-HCl of 1:4:95 (v/v/v). The reaction was started by adding 50 μl of culture supernatant to 200 μl of reaction mixture at 42°C, and absorbance at 420 nm was monitored with Hitachi Spectrophotometry for 20 min. The activity was measured by the increase of optical density (OD). procedure from: Export of recombinant proteins in Escherichia coli using ABC transporter with an attached lipase ABC transporter recognition domain (LARD) Chan Woo Chung, Jinsun You, Kyeongyeon Kim, Yuseok Moon, Hoeon Kim and Jung Hoon Ahn* Published: 29 January 2009 Microbial Cell Factories 2009, 8:11 doi:10.1186/1475-2859-8-11 Received: 18 November 2008 Accepted: 29 January 2009 This article is available from: http://www.microbialcellfactories.com/content/8/1/11 ===User Reviews=== BBa_K258006 StartReviews BBa_K258006 EndReviews In our experiment, we observed that TliA fused proteins were excreted to supernatant culture succesfully by detecting lipase activity with tributyrin and spectrophotometric detection with the substrate p-nitrophenyl phosphate at 420 nm. At the experiments, Tlia fused proteins were excreted ten- fold more with ABC transporter PrtDEF of Erwinia chrysanthemi. Same results took place lipase activity at size of zone around supernatant on tributyrin mixed agar plate