![](https://parts.igem.org/images/partbypart/icon_coding.png)
Part:BBa_K4335003
ChlamyHgR
Berthold et al. (2002)([1]) found that the aminoglycoside phosphotransferase gene (aphVII) from Streptomyces hygroscopicus works as a selectable marker for C. reinhardtii establishing a hygromycin resistance.
BBa_K4335003 is a resistance gene optimized for Chlamydomonas reinhardtii based on the original gene. We inserted a 145bp intron into the original gene to facilitate its expression in Chlamydomonas reinhardtii.
Introns are ubiquitous in eukaryotes and are an important feature that distinguishes them from prokaryotes. In higher organisms, introns have been reported to regulate expression at multiple levels. The main function of introns is to generate different exon combinations by alternative splicing and then translate different proteins, which improves the complexity of the proteome. [2]
Validation
We found from the registry page that BBa_K2984012 from iGEM19_Humboldt_Berlin's team was very similar, so we compared BBa_K4335003 with BBa_K2984012 using snapgene (Figure 1)![](https://static.igem.wiki/teams/4335/wiki/zhhyg6.png)
Figure 1 Comparison of BBa_K4335003 and BBa_K2984012 DNA sequences
Usage
We inserted ChlamyHgR into plasmids pTX2038 and pTX2040 as marker genes for transformation screening.Result
Plasmid construction
To verify our successful assembly, we designed two primers, Hgy-F and Hgy-R, for PCR verification. The primer location, primer sequence and gel map are shown in the following figure:![](https://static.igem.wiki/teams/4335/wiki/zhhyg4.jpg)
Figure 2.The primers:Hgy-F and Hgy-R
![](https://static.igem.wiki/teams/4335/wiki/zhhyg10.png)
![](https://static.igem.wiki/teams/4335/wiki/zhjt5.jpeg)
Figure 3.The length of the amplified sequence was 606bp;M is DNA Marker.
The determination of optimal screening concentration
We introduced plasmids pTX2038 and pTX2040 containing APHVII ChlamyHgR gene into Chlamydomonas reinhardtii by electrical transformation.According to the specificity of the codon of Chlamydomonas reinharditii, our team optimized and designed a new part for the ChlamyHgR (Part:BBa_K4335003) based on the existing part, and the new part acted as the selection standard for transforming positive clones. However, the inhibition effect of hygromycin varies with species. Therefore, we designed and performed experiments to determine the minimum inhibitory concentration of Hyg on the growth of Chlamydomonas reinhardtii in solid medium.
![](https://static.igem.wiki/teams/4335/wiki/mcherry-5.jpg)
Figure 4. Sequence alignment of Hyg resistance gene.
M:2000bp DNA marker; WT:wild type; Plasmid: Linear plasmid corresponding to the vector.
Reference
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 782
Illegal NgoMIV site found at 890 - 1000COMPATIBLE WITH RFC[1000]
None |