Tag

Part:BBa_K4140007

Designed by: Ahmed Gamal Mohamed Mattar   Group: iGEM22_AFCM-Egypt   (2022-09-24)
Revision as of 17:02, 10 October 2022 by Ahmed Mattar (Talk | contribs) (→‎Experimental Characterization)


kp-sp


Part Description

KP-SP is a secreted signal peptide at the N-terminus of the reporter protein that enables it's secretion extracellularly with high efficiency which indicates the versatility of this signal peptide and its significant potential in heterologous protein expression. this peptide comes from E.Coli as well as actinomycetes and can be secreted under normal instances

Usage

To transmit the response of our circuit to high levels of phenylalanine from intracellular to extracellular we linked Kp Sp signal at the N-terminus of the PAH for transmitting it extracellularly to hydroxylate excess phenylalanine into tyrosine in the therapeutic circuit and to export beta-galactosidase extracellularly to turn the color into blue once bound to its x-gal substrate. as shown in figure 1 and 2. Wcb.png


Figure 1. (shows the tagging of LacZ alpha with kp-sp in the diagnostic whole cell-based biosensor.)

Imagee.png


Figure 2. (shows the tagging of PAH with kp-sp in the therapeutic E.coli-based system.)




Characterization by mathematical modeling

We are using mathematical modeling to detect the increased level of phenylalanine (phe) in phenylketonuria patients in our diagnostic platform. It depends on a whole cell-based biosensor through a cascade of reactions to finally end by formation of β-galactosidase that turns the color into blue once bound to its substrate (X-gal) as mentioned in figure (4) and graph (1).

Modell1.png
Figure (4) represents the cascade of reactions in whole cell-based biosensor model. Modell11.png


Graph(1) illustrates a direct relation between biomarker and beta-galactosidase ,so as the biomarker increases, the released amount of beta-galactosidase increases till it reaches constant value after about 30 time units. Therefore, the maximum amount of the biomarker releases the maximum amount of beta-galactosidase.

Experimental Characterization

Tube121.png








This figure shows an experimental characterization of this part as it's validated through gel electrophoresis as it is in lane 10 (the last one). The running part (ordered from IDT) included KP-SP - PAH.













References

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
None