Part:BBa_K4158010

Psrtf1-GFP

This part encodes RBS, GFPuv coding site and a promoter regulated by SRTF1 and progesterone. SRTF1 is a transcriptional repressor specific to progesterone. Upon the binding of progesterone, GFP downstream of the binding region of SRTF1 is expressed as the repressor SRTF1 is deactivated. Thus, this part works as a reporter plasmid to confirm existence of progesterone.

Fig. 1. progesterone detector gene circuit

Design

Promoter and SRTF1 binding site: Sequence information was cited from a previous paper[1]. Consequently, the promoter sequence was the same as BBa_J23102 and the SRTF1 binding site was the same as BBa_K3889030.

RBS: We designed RBS by using RBS calculator and RNA fold as it optimizes to GFPuv.

RBS+GFPuv sequence is the same as BBa_K4158011.

Then, we constructed this part by infusion cloning. A fragment of Psrtf1-gfp was inserted into pACYC184 vector which was cut on restriction enzyme sites of HindIII and BamHI.

Results

We demonstrated that this part could detect progesterone in the cell-free protein synthesis system in E.coli.

In order to detect progesterone in vitro, we transformed the SRTF1-expressing plasmid (BBa_K4158012) into BL21(DE3)Star strain and prepared crude extracts which were pre-enriched with the transcription factor, SRTF1.

Fig. 2. Preparation of SRTF1-enriched extract

We performed cell-free protein synthesis reaction using the extracts and this reporter plasmid. Fig. 3. shows the result of the cell-free protein synthesis reaction. We added 100uM of progesterone in the final concentration.

From Fig. 3., we could confirm the following;

• When progesterone was added in the absence of the reporter plasmid, an increase in GFP fluorescence was not observed (left).
• When only the plasmid was added in the absence of progesterone, an increase in GFP fluorescence was slightly observed, due to the leak expression (middle).
• When progesterone was added to the condition above, an increase in GFP fluorescence was observed (right).

So, we concluded below.

• Comparing the middle and the right, making activated SRTF1-enriched E.coli extract was successfully achieved.
• Comparing the left and the right, engineering SRTF1(progesterone) regulated reporter SRTF1 reporter gfp plasmid(BBa_K4158010 was successfully achieved. we achieved a project based on BioBricks, which is an important standard component in synthetic biology.

Fig. 3. The result of progesterone detection by SRTF1

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  INCOMPATIBLE WITH RFC[12]

  Illegal NheI site found at 13
  Illegal NheI site found at 36
  
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BamHI site found at 826
  Illegal XhoI site found at 529
  
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]

References

1. Sankar K et al. A progesterone biosensor derived from microbial screening. ACS Sens. 7(4):1132-1137(2022).