Coding
PsPT1

Part:BBa_K4179001

Designed by: Yasmin Habib   Group: iGEM22_Technion-Israel   (2022-09-18)
Revision as of 09:22, 18 September 2022 by Registry (Talk | contribs)

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Pastinaca sativa prenyl transferase 1 (PsPT1)

P. sativa prenyltransferase 1 (PsPT1) was discovered and characterized as a plastidic prenyltransferase, with 6 predicted transmembrane helices, that synthesize demethylsuberosin (DMS), a linear furanocoumarin (FC) intermediate, and osthenol an angular FC intermediate, respectively, in parsnip. Prenylation is a structural modification in which an isoprenoid moiety, prenyl being the most common, is transferred from a donor molecule to an acceptor. Prenylation of aromatic substrates is known to enhance their bioactivity and is an essential step in the biosynthesis of biologically active secondary metabolites, which play an integral role in the survival and disease resistance of many plant species. To perform prenylation, plants use membrane-bound aromatic prenyltransferases (PTs) that transfer isoprenoid moieties from pyrophosphate donor substrates to aromatic acceptor substrates. PsPT1 is an umbelliferone dimethylallyltransferase (UDT), a prenyltransferase that is specific for the first reaction step in the FC biosynthetic pathway. It mediates a prenylation reaction in which umbelliferone is the acceptor of the prenyl group, and dimethylallylpyrophosphate (DMAPP) is the donor, producing DMS of the prenylation took place at the C6 position of umbelliferone, and osthenol if prenylation occurred in the C8 position. Crude leaf microsomes were prepared by Munakata et al., to investigate angular FC synthesis in parsnips. Incubation of the microsomes with umbelliferone, DMAPP, and the cofactors required for the reaction generated DMS and, to a lesser extent, osthenol, thus indicating that the UDTs in parsnip favor the formation of DMS over osthenol.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 127
    Illegal EcoRI site found at 562
    Illegal PstI site found at 55
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 127
    Illegal EcoRI site found at 562
    Illegal NheI site found at 1210
    Illegal PstI site found at 55
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 127
    Illegal EcoRI site found at 562
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 127
    Illegal EcoRI site found at 562
    Illegal PstI site found at 55
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 127
    Illegal EcoRI site found at 562
    Illegal PstI site found at 55
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
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