DNA

Part:BBa_K4041001

Designed by: Derek Zhang   Group: iGEM21_HKIS   (2021-10-21)
Revision as of 20:29, 21 October 2021 by Oranges (Talk | contribs)


Vibrio Cholerae partial genomic ctxA template

This is a non-coding part that consist of the ctxA gene of the Vibrio Cholerae. The genome template is used for cloning into a plasmid and contains conserved regions so teams could design detection kit based on the conserved regions.

ctxA gene is one of the central and important gene that makes the Vibrio Cholerae pathogenic. While it is important for its cytotoxicity, it itself could be served as a biomarker for the strains.



The following qPCR primer were proved to work in this block in in Vibrio
TDH Reverse GACACCGCTGCCATTGTATAGT
TDH Forward CCCGGTTCTGATGAGATATTGT
vcgC Reverse CGCCAATAGCCTGTTCAGAT
vcgC Forward GCAGTTCAAACATGGTCTCAAA
ctxA Reverse GGTCTTATGCCAAGAGGACAGA
ctxA Forward CCATCATCGTGCCTAACAAATC
The following RPA primer were proved to work in this block in in Vibrio
TDH Reverse CTTATAGCCAGACACCGCTGCCATTGTATAGT
TDH Forward CCCGGTTCTGATGAGATATTGTTTGTTGTTCG
vcgC Reverse GCGAGTAGTGAGCCGATCCCGCCAATAGCCTG
vcgC Forward GGCGCAGTTCAAACATGGTCTCAAAAAGGAGC
ctxA Reverse GCAGTCAGGTGGTCTTATGCCAAGAGGACAGA
ctxA Forward ACATATCCATCATCGTGCCTAACAAATCCCGT
The following crRNA were proved to work in this block in in Vibrio
TDH forward (crRNA1) ACTGTGAACATTAATGATAA
vcgC forward (crRNA3) ATAGCACTAATGTGTCATCT
vcgC reverse (crRNA4, with PAM) GCGGAGACGAGATCGCTATC
ctxA Forward (crRNA5) TGATCATGCAAGAGGAACTC
crRNA 2 (high background) and crRNA 6 (no cleavage signal) is not functional from design, and is discarded

HKIS--snapgene_map.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
None