Coding
albA1

Part:BBa_K3790004

Designed by: Guanqiao Chi   Group: iGEM21_Fudan   (2021-10-01)
Revision as of 01:48, 21 October 2021 by TiTong Fudan (Talk | contribs) (Experimental Results)


albA1


Introduction

2021 Fudan

albA1 is a double-stranded binding protein from the same species as Sso7d, Sulfolobus solfataricus, which is close to Sso7d in length and structure. So we speculate that it may have a similar function to enhance DNA polymerase activity as Sso7d.

Usage and Biology

Sso7d is a double-stranded binding protein that is linked to DNA polymerase A or DNA polymerase B to produce a fusion protein with higher synthetic efficiency compared to wild-type DNA polymerase. albA1 is a double-stranded binding protein from the same species as Sso7d, Sulfolobus solfataricus, which is close to Sso7d in length and structure, so we speculate that it may be related to Sso7d, so we speculate that it may have a similar function to enhance DNA polymerase activity as Sso7d. The Bst Pol selected for this experiment was DNA polymerase Ⅰ, and no previous studies have focused on whether double-stranded binding proteins can enhance the activity of DNA polymerase Ⅰ. However, we ventured to guess that the double-stranded binding protein could enhance the related activity of DNA polymerase Ⅰ, and performed the next validation experiments.

Experimental Results

Since the length of the albA1 fragment is less than 500bp, we chose to synthesize the sequence ourselves by Oligo assembly by Phanta polymerase. We obtained the relevant sequence information from ncbi and designed synthetic primers for synthesis File:T--Fudan--Oligo assembly by Taq polymerase.jpg\Figure.1 Oligo assembly by Phanta polymerase

The molecular weight of the albA1 DNA was 288 bp, which is approximately 300 bp after adding homology arms to both ends by PCR reaction. We isolated the DNA of interest by gel recovery for subsequent ligation reactions. File:T--Fudan--albA1-S.ssb-E.ssb.jpg\Figure.2 T--Fudan--albA1-S.ssb-E.ssb.jpg

Reference

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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