Coding

Part:BBa_K3989014

Designed by: Song-Yuan Zhang   Group: iGEM21_UZurich   (2021-10-01)
Revision as of 11:01, 20 October 2021 by ZhangSongyuan (Talk | contribs)


double cellulose binding domain fused with ClyA for OMV display

In this construct, outer membrane-associated protein ClyA (Part:BBa_K811000) is used to display the double cellulose-binding domain (dCBD, Part:BBa_K1321340) to the surface of bacterial outer membrane vesicles (OMVs). To make dCBD better displayed, we put multiple linkers and a 3×FLAG tag between ClyA and dCBD to minimize the steric hindrance.

Usage and Biology

Chracterization by team 2021 UZurich

Seedling growth inhibition (SGI) assay was performed to test whether displaying cellulose-binding domain on OMV surface can enhance the plant immune response (the lower the seedling weight, the stronger the plant immune response). OMV with only ClyA (blue boxes) was used as the negative control.

As the figure shown below, the seedling weight of negative control group gradually decreases as OMV concentration increases. However, for ClyA-dCBD, the seedling weight dramatically decreases between concentrations of 0 and 2.5 ug/mL, but doesn't decrease a lot as concentration further increases, which means the immune response might get saturated.

ClyA-dCBD-SGI.png

One explanation of such results can be the enrichment of OMVs by cellulose in cell wall, which makes OMVs more effective at low concentrations.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
None