Coding

Part:BBa_K3373005:Design

Designed by: Antonin Chevenier   Group: iGEM20_Sorbonne_U_Paris   (2020-10-16)
Revision as of 23:30, 27 October 2020 by Antonin chev (Talk | contribs) (→‎References)

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UVR8 A. thaliana codon optimized for C. reinhardtii


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 28
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 28
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 850
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 28
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 28
    Illegal NgoMIV site found at 75
    Illegal AgeI site found at 672
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The CDS is standardized in the Phytobrick standard for the C. reinhardtii MoClo Kit at the B3 (N-terminus coding region) position by adding BbsI sites and the corresponding fusion sites on both ends. The stop codon was removed to allow for fusion with another protein sequence and also tagging at the C-terminal position, the stop codon being provided by the part on the position B5.


Source

Pseudomonas sp. (strain ADP) 47660 [NCBI]

References

1. Crozet P, Navarro FJ, Willmund F, Mehrshahi P, Bakowski K, Lauersen KJ, Pérez-Pérez ME, Auroy P, Gorchs Rovira A, Sauret-Gueto S, Niemeyer J, Spaniol B, Theis J, Trösch R, Westrich LD, Vavitsas K, Baier T, Hübner W, de Carpentier F, Cassarini M, Danon A, Henri J, Marchand CH, de Mia M, Sarkissian K, Baulcombe DC, Peltier G, Crespo JL, Kruse O, Jensen PE, Schroda M, Smith AG, Lemaire SD. Birth of a Photosynthetic Chassis: A MoClo Toolkit Enabling Synthetic Biology in the Microalga Chlamydomonas reinhardtii. ACS Synth Biol. 2018 Sep 21;7(9):2074-2086. doi: 10.1021/acssynbio.8b00251. Epub 2018 Sep 5. PMID: 30165733.

2. Weber E, Engler C, Gruetzner R, Werner S, Marillonnet S. A modular cloning system for standardized assembly of multigene constructs. PLoS One. 2011 Feb 18;6(2):e16765. doi: 10.1371/journal.pone.0016765. PMID: 21364738; PMCID: PMC3041749.