Part:BBa_K3506021
U6 promoter
U6 promoter is used to drive the transcription of homing guide RNA（hgRNA） in lineage tracing for eukaryotic systems. We used it to initiate the transcription of hgRNA(sgRNA). The U6 promoter has a transcription start point G. The 5′-TTTTT-3′ sequence located downstream of the promoter is used as a transcription termination signal, and 2-4 oligomeric U will be added at the 3’ end of the transcription product.
Biology and Usage
RNA polymerase III promoters initiates the transcription of small non-coding RNAs, including 5S rRNA , tRNAs, and other small RNAs such as the U6 snRNA[1]. U6 promoter is recognized by RNA polymerase III. We use it to initiate the transcription of hgRNA in CRISPR/Cas9 system. This promoter can also be used to transcribe short hairpin RNA (shRNA). The shRNA is recongnized and digested by Dicers to generate siRNA, which can interfere with the expression of target genes through the RNAi system.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
[1]Wang, Y., Wei, D., Zhu, X. et al. A ‘suicide’ CRISPR-Cas9 system to promote gene deletion and restoration by electroporation in Cryptococcus neoformans. Sci Rep 6, 31145 (2016).
[2]Li Q, Wang W, Zhao N, Li P, Xin Y, Hu W. Identification and validation of a Schistosoma japonicum U6 promoter. Parasit Vectors. 2017;10(1):281. Published 2017 Jun 5. doi:10.1186/s13071-017-2207-4
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