Part:BBa_K3365001

Target binding site for dCas9 and subnit Omega

This part is used to detect whether dCas9 protein is on-target.The sequence is made up of PDCD1, which is the binding site of dCas9, and J23117 BBa_J23117 (visit: [1]) weak promoter spaced by 35 base pairs. The dCas9 in part BBa_K3365001 (visit: [2]) could bind to the PDCD1, wihch as the target of dCas9, under guidence of specific designed sgRNA, while subunit Omega could bind to J23117 and activating the expression of downsream fluorescent protein. According to reference, we knew that 35 base pairs is the best spacer for activating, so we chose 35 base pairs in plasmid pUC57 at random.

< img src=“https://parts.igem.org/File:Target_binding_site_for_dCas9_and_subnit_Omega.png#file”/>

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  INCOMPATIBLE WITH RFC[12]

  Illegal NheI site found at 66
  Illegal NheI site found at 89
  
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]