RNA

Part:BBa_K115002:Design

Designed by: Bastiaan van den Berg   Group: iGEM08_TUDelft   (2008-07-15)
Revision as of 12:28, 28 October 2008 by Bavandenberg (Talk | contribs) (→‎Design Notes)

RNA thermometer (FourU)


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The figure shows the secondary structure of the original RNA thermometer as well as the secondary structure of this part. Because of the scar that is introduced during the ligation process, some nucleotides had to be changed in order to get the same secondary structure as that of the original one. The changed nucleotides are the ones with the blue dots. The working of the RNA thermometer is based on this secondary structure and that is why it is important that this part has the same secondary structure (after ligation to a protein coding part) as the original RNA thermometer.

More information on the design of this part can be found [http://2008.igem.org/Team:TUDelft/Temperature_design here].

BBa K115002.png

Source

Salmonella Enterica Tyhpy (CP000886.1)


References